G394297


Basic Information

Item Value
gene id G394297
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 35254791 ~ 35255120 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU447394
tatcaattgctcatgtcatgttgatcaaaatatagtagatggttctctgttgaatagtcttacccctcaaaacatctaggcattagttccTTGCATAAGCCATTACATGCAAAATTGTTGAACTATTTGTCATAAACTGTCTGTCAAGCATATTTTTACACATTTGTATAAGACCTTTTGTACAAAAATGTGAATTGATGAATCGTGCAGGTTAAATTGACCCTCACTCATGaaggaatgtaaagtgttagttcaaccaacaatcaaccagttgtctaaattgctcaaaggtgcatctcatgaagaatcaattggcaagcatatatagac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU447394 True 330 lncRNA 0.34 1 35254791 35255120

Neighbor

gene id symbol gene type direction distance location
LOC110523660 LOC106565209 coding upstream 55800 35086826 ~ 35206863 (+)
adra1ab LOC106565247 coding upstream 805999 34436786 ~ 34448792 (+)
si:ch211-127i16.2 LOC106565287 coding upstream 1107465 34107180 ~ 34147326 (+)
LOC110523649 LOC106565324 coding upstream 1165807 33846773 ~ 34088984 (+)
si:dkey-242g16.2 LOC106565196 coding downstream 98978 35354098 ~ 35357244 (+)
stoml2 stml2 coding downstream 212820 35467940 ~ 35480670 (+)
LOC118964586 LOC106565090 coding downstream 227108 35482228 ~ 35542795 (+)
unc13bb LOC106565090 coding downstream 291425 35546545 ~ 35595618 (+)
atp8b5b LOC106565083 coding downstream 347481 35602601 ~ 35620548 (+)
G394291 NA non-coding upstream 2234 35252327 ~ 35252557 (+)
G394286 NA non-coding upstream 5300 35249265 ~ 35249491 (+)
G394268 NA non-coding upstream 16704 35237888 ~ 35238087 (+)
G394147 NA non-coding upstream 58292 35196282 ~ 35196499 (+)
G394312 NA non-coding downstream 7967 35263087 ~ 35263357 (+)
G394320 NA non-coding downstream 13923 35269043 ~ 35269640 (+)
G394321 NA non-coding downstream 14524 35269644 ~ 35269970 (+)
G394361 NA non-coding downstream 44253 35299373 ~ 35299642 (+)
G394373 NA non-coding downstream 49191 35304311 ~ 35304545 (+)
G392776 NA other upstream 1106090 34147474 ~ 34150795 (+)
G391805 NA other upstream 1893450 33360957 ~ 33361341 (+)
G391513 LOC100136561 other upstream 2091811 33158826 ~ 33162980 (+)
G390393 NA other upstream 3034258 32220181 ~ 32220533 (+)
G390184 NA other upstream 3294046 31960355 ~ 31960745 (+)
G394882 NA other downstream 649992 35905112 ~ 35905781 (+)
G394910 NA other downstream 711817 35966937 ~ 36004829 (+)
you2 you2 other downstream 778140 36033260 ~ 36034806 (+)
G395005 LOC106564805 other downstream 947781 36202901 ~ 36206616 (+)
G395034 NA other downstream 1025180 36280300 ~ 36301290 (+)

Expression

G394297 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 4.
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G394297 Expression in each Bioproject

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G394297 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 50.
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Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G61105 NA non-coding CI01000010 null 805070 ~ 805362 (-)
mexican tetra (Astyanax mexicanus) G51588 NA non-coding NC_035902.1 CM008305.1 12623596 ~ 12648417 (+)