G395677


Basic Information

Item Value
gene id G395677
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 36582772 ~ 36585879 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU448964
ATCCCTTTCTTTGTAATTCTTTAGTTATCTCACAAAAATAGATTTGTGCACAGAAATCACAGCTCTGACGCAGGATTGGGTGTCATAGAAACGGACAGGGATCCAGAACAACAGCTTTTTCCACTTTTTGCAAAAACAACAGGGTAACATGAAGGTTCTCGTTTTTTTACAACAACAAATGTAACTACCTGGAGGGCAAGACCTTTACAACAGCACAGTGGTGTCTACAGGAAGAAGCAAGGATTGCATAGGTCAATAGCCACAtgagtatctatctatctatctgcagATGGTGTGAGGAGGGGGGGCTAAGATGTGAACTTCAGCCTTCCATTGGTTGCACATGTCTACAAAAGCCTGAGAAAGATGGGACACAACATTGGATTTCAGAATACTGTCAATAAATGTTGTTGCTTGGCATGCCTTGTTTTCGAATACTGCAGTAGAGCAATTATCTGTAATTCCTTAAATGCCCAACAGCATAACAGCATAGCGAGCAGTCCTATCAGGGCGTGTATGTGGTGGTCGTGGAGTCCTGTGTAGTGCTTGCCCCTATGTCTGATACACAACCACTTCGTTATACACTTTGCAGTCATGACAACATGATATGACGAGTCATTATTTCTTTCCGTTCACCATATTCAATCAGATCACAGACTCCAGTGGTCCCACTCAAAAAGACACAGATGCCCTACTCTCAGATACAGTGGCTTGCTTCCTCTATAGGCAACAGAGTGACTCGGCGCAATTCAAGACGGCCTGTGCTTTTCAATATGACGAACACCAACACCACTGTCGATGTCACTGTTTTTGCAGCGAGttcaaacaacaacacaaccgcATCACATCCAACAACTCAGACTAGCTAGGAGTTACATTACTCTAtgtccacacatacacacacacaccaatgacaACACTGTCTACCAACAAACCAGAACATTCAACAACACGGTCATGCTTCGATATGCATCTTTTTGATCATGTAAAATCTGTGCCGGAGAAAGCATGGAGTCGCAGCACTATTTCAgcgaagactgtagttctgcctTTGTACAGCGTGAGTAAGTATGGTACAGTATAAGACATGGTAAAGTTCCCTGTGTAGTGGTCCCATTGCACAACAAACTAGTTTGTTTATAATACAATCCTCCTTAGGTGAAGGCAAGTAAACAGATGCTACTTGGAGAAATCCTACCCAACCCTCAACAGATCAAAGCTAAGGTTGTCATAACTGTATGTTTTTACTGATGTCACAACGGCAACCCGGGGAGAAATATGGCGAGAAACACATTCTCAAACACAGCTGCACAAACAGGAAAAACATCATGTATTTCTTCTATAATAGTCATCTTTagaattatatttatatatatatatatatattatccatctttatttatagactaatatTCAGTTCATACATTCATTCTCTAACACTATTCATACTCACATTTAATATTAGTTACATATGAAATTAAtttttctatatatatttttttttttattctcacAATGTAACGCTATGATGACAGATGAAGAACAGAGCACATTTGACCAATTACTTTTTGAGGAACCAAAACGTTAAGACCACTGGGTCCGTGGGTATTGCAGGTAAACATACATTTACAGTATGTAGGGCCGATAAATGACTATGATATAGGACCTATGTACAAGTAGGAATGCACGTTTGCAGGGAATGATTGCGTGGGCACATACAGCCTGAAATGAAAGGGATGATATGGACTGTCTGTATACATGTAGTCAGACTAAAGAGGGCAAGAAAAGAAAAACGAGCAAATAAATGCTTTCGAAAAGCATCAACGTTGTCAACGTGTAGCCGACTCCCTAGCCAAGCTCGTGTTTTCACATCTTAGCTTCTTCCTTTGGGAATGTTAACTCCACATTTCTGTTATTGTAGGCTTAAAGCCTTATGTTGGTGCAAATGTATTCGCTTTTTGAGAAGAACTGACTCGCTAATTTCCACATATAAGGAAGGCTCAacctctggaacagctggtggaCTGTTCCAGTCATTTTAGATCTGACATCCCATCCATCCCGCCTGCAGGCTATGATACCTCATGCTAAGTGCTAAAACACAAGCCCTGGCAACACAGCCACTGAACAGGTAGATAATTAAATTGGCAGATATACCCATGAAATAATTCTGTCTACAATATACAATAAATCAATGGTGTGATATTGGTGTTACCAAATGTGCGCAAACAAATAATAACCCAAGTGAAACATAACAGTGGAAAAAGGAGACAACACATCTACTTGTGCACCATAACAACGAGCCAACAACTACAAGAGTGGAGTTCTCTGGTTCCTTATAGGACACAATGCCGTGTGACTGGACACTGTTCCTAGACATACCAGAGACAGGAATAAAACATGGTGAAACATTCTACAGAAAGAAGAACTCTTGGATGAAGTTAGTGTGTCGTGAACGCAAAAGGTAGAAGCAGCGTGACGTTGTTTGCCATGATGACCCCAGAAGGGCAAGAGAATATAAATGCTGTGAAAGCATGAAATGAGAGGGCAGAGGGGAGAAGAAGAAAAGTGGTGGGCATGATGGGAATCAATACCAGAGGCATGATGGGAATCAATACCAGAGGCATGATGGGAATCAATACCAGGGGCACGATGGGAATCAATACCAGGGGCACGATGGGAATCAATACCAGGGGCACGATGGACGATGGGAATCAATACCAGAGGCACGATGGGAATCAATACCAGAGGCACGATGGGAATCAATACCAGAGGCACGATGGGAATCAATACCAGAGGCATAGGACAAACAcgaacaggacaatggcccagtGTGTTTGGAATCACAGATGGAGTTTACATGGAACAAGCGTTAGTCACGGGAACGAATAGTGGAACGGGGGTGTAACAATTAATGGTGGGGTCTACTCTCCTCTCGAGCGTCACtacttctacccccccccccctctctatttagTTTCCCGGCTCCCCAGCGCCCTCTACAGGTCGATGAGCTGGTCCACCATGAGCAGGGAGCGGGCCAGGCTGGGCAGGCTGGATTCAGAGCTGCCACTGTTACTGCGA
>TU448965
ATCCCTTTCTTTGTAATTCTTTAGTTATCTCACAAAAATAGATTTGTGCACAGAAATCACAGCTCTGACGCAGGATTGGGTGTCATAGAAACGGACAGGGATCCAGAACAACAGCTTTTTCCACTTTTTGCAAAAACAACAGGGTAACATGAAGGTTCTCGTTTTTTTACAACAACAAATGTAACTACCTGGAGGGCAAGACCTTTACAACAGCACAGTGGTGTCTACAGGAAGAAGCAAGGATTGCATAGGTCAATAGCCACAtgagtatctatctatctatctgcagATGGTGTGAGGAGGGGGGGCTAAGATGTGAACTTCAGCCTTCCATTGGTTGCACATGTCTACAAAAGCCTGAGAAAGATGGGACACAACATTGGATTTCAGAATACTGTCAATAAATGTTGTTGCTTGGCATGCCTTGTTTTCGAATACTGCAGTAGAGCAATTATCTGTAATTCCTTAAATGCCCAACAGCATAACAGCATAGCGAGCAGTCCTATCAGGGCGTGTATGTGGTGGTCGTGGAGTCCTGTGTAGTGCTTGCCCCTATGTCTGATACACAACCACTTCGTTATACACTTTGCAGTCATGACAACATGATATGACGAGTCATTATTTCTTTCCGTTCACCATATTCAATCAGATCACAGACTCCAGTGGTCCCACTCAAAAAGACACAGATGCCCTACTCTCAGATACAGTGGCTTGCTTCCTCTATAGGCAACAGAGTGACTCGGCGCAATTCAAGACGGCCTGTGCTTTTCAATATGACGAACACCAACACCACTGTCGATGTCACTGTTTTTGCAGCGAGttcaaacaacaacacaaccgcATCACATCCAACAACTCAGACTAGCTAGGAGTTACATTACTCTAtgtccacacatacacacacacaccaatgacaACACTGTCTACCAACAAACCAGAACATTCAACAACACGGTCATGCTTCGATATGCATCTTTTTGATCATGTAAAATCTGTGCCGGAGAAAGCATGGAGTCGCAGCACTATTTCAgcgaagactgtagttctgcctTTGTACAGCGTGAGTAAGTATGGTACAGTATAAGACATGGTAAAGTTCCCTGTGTAGTGGTCCCATTGCACAACAAACTAGTTTGTTTATAATACAATCCTCCTTAGGTGAAGGCAAGTAAACAGATGCTACTTGGAGAAATCCTACCCAACCCTCAACAGATCAAAGCTAAGGTTGTCATAACTGTATGTTTTTACTGATGTCACAACGGCAACCCGGGGAGAAATATGGCGAGAAACACATTCTCAAACACAGCTGCACAAACAGGAAAAACATCATGTATTTCTTCTATAATAGTCATCTTTagaattatatttatatatatatatatatattatccatctttatttatagactaatatTCAGTTCATACATTCATTCTCTAACACTATTCATACTCACATTTAATATTAGTTACATATGAAATTAAtttttctatatatatttttttttttattctcacAATGTAACGCTATGATGACAGATGAAGAACAGAGCACATTTGACCAATTACTTTTTGAGGAACCAAAACGTTAAGACCACTGGGTCCGTGGGTATTGCAGGTAAACATACATTTACAGTATGTAGGGCCGATAAATGACTATGATATAGGACCTATGTACAAGTAGGAATGCACGTTTGCAGGGAATGATTGCGTGGGCACATACAGCCTGAAATGAAAGGGATGATATGGACTGTCTGTATACATGTAGTCAGACTAAAGAGGGCAAGAAAAGAAAAACGAGCAAATAAATGCTTTCGAAAAGCATCAACGTTGTCAACGTGTAGCCGACTCCCTAGCCAAGCTCGTGTTTTCACATCTTAGCTTCTTCCTTTGGGAATGTTAACTCCACATTTCTGTTATTGTAGGCTTAAAGCCTTATGTTGGTGCAAATGTATTCGCTTTTTGAGAAGAACTGACTCGCTAATTTCCACATATAAGGAAGGCTCAacctctggaacagctggtggaCTGTTCCAGTCATTTTAGATCTGACATCCCATCCATCCCGCCTGCAGGCTATGATACCTCATGCTAAGTGCTAAAACACAAGCCCTGGCAACACAGCCACTGAACAGGTAGATAATTAAATTGGCAGATATACCCATGAAATAATTCTGTCTACAATATACAATAAATCAATGGTGTGATATTGGTGTTACCAAATGTGCGCAAACAAATAATAACCCAAGTGAAACATAACAGTGGAAAAAGGAGACAACACATCTACTTGTGCACCATAACAACGAGCCAACAACTACAAGAGTGGAGTTCTCTGGTTCCTTATAGGACACAATGCCGTGTGACTGGACACTGTTCCTAGACATACCAGAGACAGGAATAAAACATGGTGAAACATTCTACAGAAAGAAGAACTCTTGGATGAAGTTAGTGTGTCGTGAACGCAAAAGGTAGAAGCAGCGTGACGTTGTTTGCCATGATGACCCCAGAAGGGCAAGAGAATATAAATGCTGTGAAAGCATGAAATGAGAGGGCAGAGGGGAGAAGAAGAAAAGTGGTGGGCATGATGGGAATCAATACCAGAGGCATGATGGGAATCAATACCAGAGGCACGATGGGAATCAATACCAGGGGCACGATGGGAATCAATACCAGGGGCACGATGGACGATGGGAATCAATACCAGAGGCACGATGGGAATCAATACCAGAGGCACGATGGGAATCAATACCAGAGGCACGATGGGAATCAATACCAGAGGCATAGGACAAACAcgaacaggacaatggcccagtGTGTTTGGAATCACAGATGGAGTTTACATGGAACAAGCGTTAGTCACGGGAACGAATAGTGGAACGGGGGTGTAACAATTAATGGTGGGGTCTACTCTCCTCTCGAGCGTCACtacttctacccccccccccctctctatttagTTTCCCGGCTCCCCAGCGCCCTCTACAGGTCGATGAGCTGGTCCACCATGAGCAGGGAGCGGGCCAGGCTGGGCAGGCTGGATTCAGAGCTGCCACTGTTACTGCGA

Function

NR:

description
ephrin type-A receptor 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU448964 False 3084 lncRNA 0.43 2 36582772 36585879
TU448965 True 3060 lncRNA 0.43 2 36582772 36585879

Neighbor

gene id symbol gene type direction distance location
antxr1b LOC105014916 coding upstream 13129 36519405 ~ 36569643 (+)
LOC110523708 LOC106564755 coding upstream 112933 36458802 ~ 36469839 (+)
LOC110523704 LOC100136432 coding upstream 206384 36371366 ~ 36376388 (+)
LOC110523692 LOC106564846 coding upstream 462667 36085124 ~ 36120105 (+)
LOC110523693 ggcx coding upstream 526737 36042518 ~ 36056035 (+)
LOC110523711 LOC106564742 coding downstream 21523 36607402 ~ 36614580 (+)
LOC110523714 LOC106565816 coding downstream 53777 36639656 ~ 36645198 (+)
LOC110522857 NA coding downstream 64069 36649948 ~ 36651750 (+)
ggt5b ggt5 coding downstream 211484 36797363 ~ 36805752 (+)
lrrc75bb LOC106564666 coding downstream 242597 36828476 ~ 36883225 (+)
G395672 NA non-coding upstream 5572 36573739 ~ 36577200 (+)
G395641 LOC106565823 non-coding upstream 74494 36508033 ~ 36508278 (+)
G395184 NA non-coding upstream 98551 36483995 ~ 36484221 (+)
G395165 NA non-coding upstream 126319 36456253 ~ 36456453 (+)
G395157 NA non-coding upstream 141016 36441435 ~ 36441756 (+)
G395748 NA non-coding downstream 109329 36695208 ~ 36696447 (+)
G395888 NA non-coding downstream 157693 36743572 ~ 36748524 (+)
G395972 NA non-coding downstream 284939 36870818 ~ 36871028 (+)
G396058 NA non-coding downstream 419774 37005653 ~ 37036550 (+)
G395034 NA other upstream 281482 36280300 ~ 36301290 (+)
G395005 LOC106564805 other upstream 376156 36202901 ~ 36206616 (+)
you2 you2 other upstream 548005 36033260 ~ 36034806 (+)
G394910 NA other upstream 577943 35966937 ~ 36004829 (+)
G394882 NA other upstream 676991 35905112 ~ 35905781 (+)
G396022 kdm2b other downstream 379205 36965084 ~ 36965652 (+)
m17 m17 other downstream 823322 37409195 ~ 37411565 (+)
srsf9 sfrs9 other downstream 1332815 37917781 ~ 37921282 (+)
LOC110523777 LOC106563114 other downstream 2728455 39297942 ~ 39317727 (+)
G399169 gpat3 other downstream 3176237 39762116 ~ 39765843 (+)

Expression

G395677 Expression in all Baseline Samples

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G395677 Expression in each Bioproject

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G395677 Expression in each Sample
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Co-expression Network