Fish Transcriptome and Expression Database

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model fish

XLOC_023317 (CR391965.1)

Basic Information

Item	Value
gene id	XLOC_023317
gene name	CR391965.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007135.7
NCBI id	CM002908.2
chromosome length	42172926
location	10255914 ~ 10256030 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046122
AGCCAAAGccacatcaccctgcagcccaagaccggttcctcactgaagctaagcagggctgagcctggtcagtatctggatgggagaccacatggggaaAGTAGGTTGCTGTTGCAC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000107850

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00046122	True	117	rRNA	0.56	1	10255914	10256030

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_023316	zgc:173856	coding	downstream	234573	10018653 ~ 10021341 (-)
XLOC_023315	zgc:171474	coding	downstream	241290	10010630 ~ 10014624 (-)
XLOC_023314	zgc:171750	coding	downstream	249756	10003426 ~ 10006158 (-)
XLOC_023313	si:ch211-146l10.7	coding	downstream	257966	9995077 ~ 9997948 (-)
XLOC_023312	zgc:171977	coding	downstream	264628	9976212 ~ 9991286 (-)
XLOC_023318	NA	coding	upstream	13826	10269856 ~ 10275658 (-)
XLOC_023319	ankha	coding	upstream	93117	10349147 ~ 10394277 (-)
XLOC_023320	NA	coding	upstream	241339	10497369 ~ 10499902 (-)
XLOC_023321	fam49bb	coding	upstream	536743	10792773 ~ 10897557 (-)
XLOC_023322	asap1b	coding	upstream	641738	10897768 ~ 11057305 (-)
XLOC_023665	dre-mir-735	misc	upstream	27921931	38177961 ~ 38178027 (-)
XLOC_023310	NA	non-coding	downstream	381223	9870547 ~ 9874691 (-)
XLOC_023309	BX649325.1	non-coding	downstream	543304	9712495 ~ 9712610 (-)
XLOC_023307	NA	non-coding	downstream	643558	9507674 ~ 9612356 (-)
XLOC_023304	NA	non-coding	downstream	969272	9252734 ~ 9286642 (-)
XLOC_023323	AL840641.3	non-coding	upstream	649142	10905172 ~ 10905286 (-)
XLOC_023324	dre-mir-7147	non-coding	upstream	692034	10948064 ~ 10948145 (-)
XLOC_023325	AL840641.1	non-coding	upstream	755406	11011436 ~ 11011551 (-)
XLOC_023305	NA	non-coding	downstream	974897	9275095 ~ 9281017 (-)

Expression

Co-expression Network