XLOC_023321 (fam49bb)


Basic Information

Item Value
gene id XLOC_023321
gene name fam49bb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 10792773 ~ 10897557 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046128
cttaAAATCATCGCTTGCCTAATGTACATGAGTCTATTAATACGCATTAATAGTAGTGTGCTTTAGTTTTCATATTGTGTAACAACGCTTGGTGGTAAATTAAAGGTATGGtcacaataaatgtaagaagCGCAGTGACGTTTTATGAACCCGGAAATAACAGTCAGTAAGACAGCTGAGAGAGAGCGAGCGACAGAGGCtcagatagatagagagagagagagagagagaggtctaAAGCCTTCTCCTTGGAGCTTATACCGTGCTACCTGGACTCCATACGTGTTTTCATCTCTTCACAATCAAAGGTACTTTGTCATGGGGAACCTCCTTAAAGTGTTAACATGCACAGACCTTGAACAAGAACCCAACTTCTTCCTCGATTTTGAAAATGCCCAGCCAACAGAAGCAGAGCGGGAAACGTGGGAAGAAGTGGATGTCGTCCTAAAAGATGCACTGGGAATACTTGACGAACTGCAAGCATATAAAGGCGCAGGCCAAGAGATACGAGAGGCAATCCAGAACCCTAATGATGAGGCATTACAAGACCAGGCATGGGCTGCTGTGGTGCCATTAGTAGGCAAACTAAAGAAGTTCTATGAATTCTCACAGAGATTAGAAGCAGCGCTGCACAGTCTATTAAGAGCACTCACAAGTGAGACATACGATGACCCCACACAGCATCTGGAGAGAGAACAGGCCCTCGCCAAACAGTTTGCTGAGATCTTGCACTTCACACTGCGCTTTGACGAGCTCAAGatgacaaatcctgCCATTCAGAATGACTTCAGTTATTACAGGAGGACCTTGAGCCGGATGAGAATCAATAACGTTCCTGCAGAGGGAGAAAATGAAGTCAATAATGAGCTGGCCAATCGGATATCTCTATTTTATGCCGACGCCACACCGATGCTGAAAACATTAAGTGACGGCACAACAAAATTCGTATCTGAGAATAAAAACTTGCCCATTGAGAACACCACAGATGTATTGAGTACCATGGCAAGTGTCTGCAAAGTCATGTTGGAAACCCCAGAATACCGCAGCCGCTTCAGCAGTGAGGAGACCGTTTCCTTCTGTCTGCGTGTCATGGTCGGGGTCATCATCCTTTATGACTATGTCCATCCTGTTGGTGCATTCGCAAAGTCCTCAAAAATAGACaTGAAAGGATGCATTAAAGTGCTCAAAGATCAGCCTCCAAACAGTGTGGAAGGTCTTCTAAATGCTCTCAGGTACACAACAAAACATCTTAATGATGAGTCGACCACTAAAACGATTAAAAGCATGCTGCAGTAGCGACAAACTCTGGGACATACACCACTGGCCTCAAGCAAATGCTCAGGAGATGCACATACACTCTCTCTCCTGGACTAAAGCGAtgcacagaatgttttttttttttttttattaaactgaaaAGAATCAGACAAAAGCTTAATCTTTTCTTGTCTTTTTACAAAACAGATGCTACTGGCGTTATGTGTGGTTttctgtgccaaaaaaaaaaaaaaaaaaaaaaaaggttttgctgAAATCCCTTGTTTTTAATGTTCCTGAATGACAGCCATGCTACTGATGGCAGCTATGAAAGCATTGTTAGATTATATTTGTGGTAAATGTTTCCCTATAAAGGTAGGGTGAGTGTTTTGACTTgaatttaaaatatctatatattatCTATATAATCTAGACACAAAAAATTCTATAAAAAGAgagaaatatattatttttgtttgaattaatatttaatgttacATTCTCTGCATGGCAAGATGATTACATTTCTTCTATTTAAAAGAAAACTAATGTTTCCGATTCATTTGTCTGCTTGATTttgtgtaaaagaaaaaaaagtgtttaaattatgttttgaaatggtACTTAGAGATTAAAATGGAGATTAATTGATAGATATTTtcaagttttatattttttatagttctctatttgtgttgtttttttttctccaataggtgttctaattttgttttgttctttttttttcatcttaaaacTAGCTTTCAAGAACTGTGATAGTATGTAATCTGTCCGATGTGATGACAACATGATCTTAAGAGGAAATAAAGTGCTTTcattttttataatgatttgtttacttatttaaatgaagTGTTGT
>TCONS_00046127
cttaAAATCATCGCTTGCCTAATGTACATGAGTCTATTAATACGCATTAATAGTAGTGTGCTTTAGTTTTCATATTGTGTAACAACGCTTGGTGGTAAATTAAAGGTATGGtcacaataaatgtaagaagCGCAGTGACGTTTTATGAACCCGGAAATAACAGTCAGTAAGACAGCTGAGAGAGAGCGAGCGACAGAGGCtcagatagatagagagagagagagagagagaggtctaAAGCCTTCTCCTTGGAGCTTATACCGTGCTACCTGGACTCCATACGTGTTTTCATCTCTTCACAATCAAAGACTGTTTCTGTTGGACTGCGACCTTGGAGAGTGCCTGGGTAGGCCTCCCTTCTGTCATCTCCTCTGCTTTTCTGTTGGTACTTTGTCATGGGGAACCTCCTTAAAGTGTTAACATGCACAGACCTTGAACAAGAACCCAACTTCTTCCTCGATTTTGAAAATGCCCAGCCAACAGAAGCAGAGCGGGAAACGTGGGAAGAAGTGGATGTCGTCCTAAAAGATGCACTGGGAATACTTGACGAACTGCAAGCATATAAAGGCGCAGGCCAAGAGATACGAGAGGCAATCCAGAACCCTAATGATGAGGCATTACAAGACCAGGCATGGGCTGCTGTGGTGCCATTAGTAGGCAAACTAAAGAAGTTCTATGAATTCTCACAGAGATTAGAAGCAGCGCTGCACAGTCTATTAAGAGCACTCACAAGTGAGACATACGATGACCCCACACAGCATCTGGAGAGAGAACAGGCCCTCGCCAAACAGTTTGCTGAGATCTTGCACTTCACACTGCGCTTTGACGAGCTCAAGatgacaaatcctgCCATTCAGAATGACTTCAGTTATTACAGGAGGACCTTGAGCCGGATGAGAATCAATAACGTTCCTGCAGAGGGAGAAAATGAAGTCAATAATGAGCTGGCCAATCGGATATCTCTATTTTATGCCGACGCCACACCGATGCTGAAAACATTAAGTGACGGCACAACAAAATTCGTATCTGAGAATAAAAACTTGCCCATTGAGAACACCACAGATGTATTGAGTACCATGGCAAGTGTCTGCAAAGTCATGTTGGAAACCCCAGAATACCGCAGCCGCTTCAGCAGTGAGGAGACCGTTTCCTTCTGTCTGCGTGTCATGGTCGGGGTCATCATCCTTTATGACTATGTCCATCCTGTTGGTGCATTCGCAAAGTCCTCAAAAATAGACaTGAAAGGATGCATTAAAGTGCTCAAAGATCAGCCTCCAAACAGTGTGGAAGGTCTTCTAAATGCTCTCAGGTACACAACAAAACATCTTAATGATGAGTCGACCACTAAAACGATTAAAAGCATGCTGCAGTAGCGACAAACTCTGGGACATACACCACTGGCCTCAAGCAAATGCTCAGGAGATGCACATACACTCTCTCTCCTGGACTAAAGCGAtgcacagaatgttttttttttttttttattaaactgaaaAGAATCAGACAAAAGCTTAATCTTTTCTTGTCTTTTTACAAAACAGATGCTACTGGCGTTATGTGTGGTTttctgtgccaaaaaaaaaaaaaaaaaaaaaaaaggttttgctgAAATCCCTTGTTTTTAATGTTCCTGAATGACAGCCATGCTACTGATGGCAGCTATGAAAGCATTGTTAGATTATATTTGTGGTAAATGTTTCCCTATAAAGGTAGGGTGAGTGTTTTGACTTgaatttaaaatatctatatattatCTATATAATCTAGACACAAAAAATTCTATAAAAAGAgagaaatatattatttttgtttgaattaatatttaatgttacATTCTCTGCATGGCAAGATGATTACATTTCTTCTATTTAAAAGAAAACTAATGTTTCCGATTCATTTGTCTGCTTGATTttgtgtaaaagaaaaaaaagtgtttaaattatgttttgaaatggtACTTAGAGATTAAAATGGAGATTAATTGATAGATATTTtcaagttttatattttttatagttctctatttgtgttgtttttttttctccaataggtgttctaattttgttttgttctttttttttcatcttaaaacTAGCTTTCAAGAACTGTGATAGTATGTAATCTGTCCGATGTGATGACAACATGATCTTAAGAGGAAATAAAGTGCTTTcattttttataatgatttgtttacttatttaaatgaagTGTTGT
>TCONS_00046129
GTACTTTGTCATGGGGAACCTCCTTAAAGTGTTAACATGCACAGACCTTGAACAAGAACCCAACTTCTTCCTCGATTTTGAAAATGCCCAGCCAACAGAAGCAGAGCGGGAAACGTGGGAAGAAGTGGATGTCGTCCTAAAAGATGCACTGGGAATACTTGACGAACTGCAAGCATATAAAGGCGCAGGCCAAGAGATACGAGAGGCAATCCAGAACCCTAATGATGAGGCATTACAAGACCAGGCATGGGCTGCTGTGGTGCCATTAGTAGGCAAACTAAAGAAGTTCTATGAATTCTCACAGAGATTAGAAGCAGCGCTGCACAGTCTATTAAGAGCACTCACAAGTGAGACATACGATGACCCCACACAGCATCTGGAGAGAGAACAGGCCCTCGCCAAACAGTTTGCTGAGATCTTGCACTTCACACTGCGCTTTGACGAGCTCAAGatgacaaatcctgCCATTCAGAATGACTTCAGTTATTACAGGAGGACCTTGAGCCGGATGAGAATCAATAACGTTCCTGCAGAGGGAGAAAATGAAGTCAATAATGAGCTGGCCAATCGGATATCTCTATTTTATGCCGACGCCACACCGATGCTGAAAACATTAAGTGACGGCACAACAAAATTCGTATCTGAGAATAAAAACTTGCCCATTGAGAACACCACAGATGTATTGAGTACCATGGCAAGTGTCTGCAAAGTCATGTTGGAAACCCCAGAATACCGCAGCCGCTTCAGCAGTGAGGAGACCGTTTCCTTCTGTCTGCGTGTCATGGTCGGGGTCATCATCCTTTATGACTATGTCCATCCTGTTGGTGCATTCGCAAAGTCCTCAAAAATAGACaTGAAAGGATGCATTAAAGTGCTCAAAGATCAGCCTCCAAACAGTGTGGAAGGTCTTCTAAATGCTCTCAGGTACAGGTACACAACAAAACATCTTAATGATGAGTCGACCACTAAAACGATTAAAAGCATGCTGCAGTAGCGACAAACTCTGGGACATACACCACTGGCCTCAAGCAAATGCTCAGGAGATGCACATACACTCTCTCTCCTGGACTAAAGCGAtgcacagaatgttttttttttttttttattaaactgaaaAGAATCAGACAAAAGCTTAATCTTTTCTTGTCTTTTTACAAAACAGATGCTACTGGCGTTATGTGTGGTTttctgtgccaaaaaaaaaaaaaaaa
>TCONS_00046130
TTAATAGTAGTGTGCTTTAGTTTTCATATTGTGTAACAACGCTTGGTGGTAAATTAAAGGTATGGtcacaataaatgtaagaagCGCAGTGACGTTTTATGAACCCGGAAATAACAGTCAGTAAGACAGCTGAGAGAGAGCGAGCGACAGAGGCtcagatagatagagagagagagagagagagaggtctaAAGCCTTCTCCTTGGAGCTTATACCGTGCTACCTGGACTCCATACGTGTTTTCATCTCTTCACAATCAAAG

Function

symbol description
fam49bb Predicted to be involved in positive regulation of T cell activation. Predicted to act upstream of or within regulation of actin filament polymerization. Predicted to be located in membrane. Is expressed in brain; corpuscles of Stannius; pancreas primordium; and pronephric duct. Orthologous to human CYRIB (CYFIP related Rac1 interactor B).

GO:

id name namespace
GO:0050870 positive regulation of T cell activation biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2590 Predicted to be involved in positive regulation of T cell activation. Predicted to act upstream of or within regulation of actin filament polymerization. Predicted to be located in membrane. Is expressed in brain; corpuscles of Stannius; pancreas primordium; and pronephric duct. Orthologous to human CYRIB (CYFIP related Rac1 interactor B).

Ensembl:

ensembl_id ENSDARG00000045417

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046128 False 2137 mRNA 0.38 11 10792773 10897557
TCONS_00046127 False 2214 mRNA 0.39 12 10792773 10897557
TCONS_00046129 False 1211 mRNA 0.44 10 10793397 10828560
TCONS_00046130 True 262 mRNA 0.42 1 10897250 10897511

Neighbor

gene id symbol gene type direction distance location
XLOC_023320 NA coding downstream 292871 10497369 ~ 10499902 (-)
XLOC_023319 ankha coding downstream 398496 10349147 ~ 10394277 (-)
XLOC_023318 NA coding downstream 517115 10269856 ~ 10275658 (-)
XLOC_023317 CR391965.1 coding downstream 536743 10255914 ~ 10256030 (-)
XLOC_023316 zgc:173856 coding downstream 771432 10018653 ~ 10021341 (-)
XLOC_023322 asap1b coding upstream 211 10897768 ~ 11057305 (-)
XLOC_023323 AL840641.3 coding upstream 7615 10905172 ~ 10905286 (-)
XLOC_023324 dre-mir-7147 coding upstream 50507 10948064 ~ 10948145 (-)
XLOC_023325 AL840641.1 coding upstream 113879 11011436 ~ 11011551 (-)
XLOC_023326 AL840641.2 coding upstream 150889 11048446 ~ 11048560 (-)
XLOC_023665 dre-mir-735 misc upstream 27280404 38177961 ~ 38178027 (-)
XLOC_023310 NA non-coding downstream 918082 9870547 ~ 9874691 (-)
XLOC_023309 BX649325.1 non-coding downstream 1080163 9712495 ~ 9712610 (-)
XLOC_023331 BX005057.1 non-coding upstream 514265 11411822 ~ 11411941 (-)

Expression


Co-expression Network