G398962 (LOC106563677)


Basic Information

Item Value
gene id G398962
gene name LOC106563677
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 39617600 ~ 39624906 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU452629
cccacaaaaagtTTATTACGACAAAAATACTCCTTAGCATCCCCCTTCCCCCAACGACCCTGCAGGTGAAGCcgtatgtggaggtcctgggcttaagtggttacaagtggtctgcggttgcAAAGCCGGTTGGatatactgtcaaattctctaaaacgacattggaggcggcttatggtaaagaaattaacattacattctctggcaacagctccgtTGGACATTCCTGATAtcggcatgccaattgcacactccctcaaaacttgagacatctttggcaGTATTCCACTTTAGAGTGGcttttaattgtccccagcacaaggtgcacctgtgtaatgatcatgctgtttaatcagcatctttatatgccacacctgtcaagtagATGGTTTATcttgcaaaggagaaatactcactgtttcagctcatgaaaatgagaccaacactttgtgttgtttatttttgttcatttaaaTAAATCATTGGTGTAGACTCATTTCCAAGTCAATGGATTAAAGGCCAATTCTGCCAATATCCTCATTCATCAactccagcaccaaaccagtaTCTACACGTGAACAGAGcttttctatgatctgtggttaaaaaggATTAGGTCCTTCAACAATGCTTGTCTTACATCACAGGGTAAGATTAGAAGTACATTTTCATAACCTGCAACAACTTTAGACCCCACATCACCTTAAATCAGTATTTGACAATCATTTTCCCcctcaattttcacctaaaattacaaacccaaatcgaactgcctgtagctcagaacctgaagcaaggatatgcatattcttgatagcatttgaaaggaaacacttaagtttgtggaaatattaaatgaatgtaggagaataacacacatTGGACCTGGTATAagataaaacaaaaaaacatgcattttctaTTTGTTgttccatctttgaaatgcaaatgccaggcgcaatttagattttggccactagacaacagcactgtatttgcaaagttttagactaatctaatgaaccattgcattactgttcaaaatgtatCAAGTCCCcccaaatgtgccaaattggtTAATTGATACATTTAAGTACAAAACTTTAGAGAACAtacaaatataatacattttgtgTTTATACTCTCAGTAATGTCATAAATGATGGCTAATTAGCTTCCCTACTGAAAATTCACCAACCTTGAGTTAGATGGGGGGGCAGACACAGCatgggttcaaactgtagaacccagttcctacattttaatataaaaatgtattttatcaaacaaaactgtgctacattttatctctggtaccctcaggatgacaaatcagagcaagatgacttgagtacattatttaccttcagaggcgaatgcatcaaaccagttgccgtaaTAAaagttgtgcactctcctcaaacaatagcatggtattttttcactgtactagctactgtaaattggacagtgcagttggattaacaagaatttaagctttctgcccatataagaccgTCCAGCGGGGGGAGGGGCGGCTGGAGATCACGTAGAGGTTAAAATGTTTAAACTTTTGATGTCGTCAAGTATAAATGTTTAACACGTTTTTTCTATTTAAAATAAACACCTTCCCACTGATGTTCTAGAAATAATGAAAATGAGGTTGAAATGTCATGTGCACTAATCTGAAATGTAATCCTCATAGCACATTGTGGCCTAGCACTTCCATTTTTACATACATCCATTTGCCCCTCATATGAAAGACAGCATTGGAGTCACAAGTGCCAACAGTTTGATTTTACAATGTCCATACTGATGTGAATAATAGATATCTCTTTAAGCCAGAATATGATTAGTTCAGCACGTGTCATTTCAGTAAGTAGCCCAAATAACCTGTCTCACCTGCAACGTTTTAACAGCATTGCCCTTAGTCATGAATCATGTATCCTATCTATTTGGAGCCTTTAGATGGATTAAAGCCAACTTTACATGAGGTGTAGGGATTTCATAATACTTATGAAGAAGCATGAAAAGACAGACATATTCCATTTTGGTAAGAATGGTTCCATTTAATTTACATTACTCCCGTGCCATGAGTTTCTGCTTCTTCAGCTTCTTCTGAGAACCTTTTTCTTAGTAGCGACTTCCTCCTCTGGTTTGGGAACGATCTGCTCCTTCTCTGTGAGGATCATCTCAATGTGGCAAGGGGAGCTCATGTAGGGGTTGATGCGACCGTGGGCACGGTATGTGCGTCTGCGCATCTTGGGGGCCTTGTTGACCTGGATGTGCTCGATCACCAGGGAGTCTACATCCAGACCTTAAGCTCCGCGTTGCTCTCAGCGTTCTTCAGCATGTGGAGAAGGAACTCTGCACTCTTCTTGGGCCAGCGGCCCTGTGTCCAGTCAAACTGCTTGGCCTGGGCACACCTGCTGACACCCCCATTGTAGCGACGGAAGGGAACACACTGGTGCTTGATGGTAACATCTTTCAGGTACTTGGTGGCTTTGCGGATGTGCATGCCTTTGATGGTCTGAGCTGTCTCACGGGTGTTCTTGAAGTGAACCCGGAGATTTGAGCCCCTCGACTTGCATGACTTAGTCGGGTTCTCGGGGTCGAGCGAGTAGCGGACCATTTTCAGAGATTTTCTAAGGCCGC
>TU452630
cAAAGCCGGTTGGatatactgtcaaattctctaaaacgacattggaggcggcttatggtaaagaaattaacattacattctctggcaacagctccgtTGGACATTCCTGATAtcggcatgccaattgcacactccctcaaaacttgagacatctttggcaGTATTCCACTTTAGAGTGGcttttaattgtccccagcacaaggtgcacctgtgtaatgatcatgctgtttaatcagcatctttatatgccacacctgtcaagtagATGGTTTATcttgcaaaggagaaatactcactgtttcagctcatgaaaatgagaccaacactttgtgttgtttatttttgttcatttaaaTAAATCATTGGTGTAGACTCATTTCCAAGTCAATGGATTAAAGGCCAATTCTGCCAATATCCTCATTCATCAactccagcaccaaaccagtaTCTACACGTGAACAGAGcttttctatgatctgtggttaaaaaggATTAGGTCCTTCAACAATGCTTGTCTTACATCACAGGGTAAGATTAGAAGTACATTTTCATAACCTGCAACAACTTTAGACCCCACATCACCTTAAATCAGTATTTGACAATCATTTTCCCcctcaattttcacctaaaattacaaacccaaatcgaactgcctgtagctcagaacctgaagcaaggatatgcatattcttgatagcatttgaaaggaaacacttaagtttgtggaaatattaaatgaatgtaggagaataacacacatTGGACCTGGTATAagataaaacaaaaaaacatgcattttctaTTTGTTgttccatctttgaaatgcaaatgccaggcgcaatttagattttggccactagacaacagcactgtatttgcaaagttttagactaatctaatgaaccattgcattactgttcaaaatgtatCAAGTCCCcccaaatgtgccaaattggtTAATTGATACATTTAAGTACAAAACTTTAGAGAACAtacaaatataatacattttgtgTTTATACTCTCAGTAATGTCATAAATGATGGCTAATTAGCTTCCCTACTGAAAATTCACCAACCTTGAGTTAGATGGGGGGGCAGACACAGCatgggttcaaactgtagaacccagttcctacattttaatataaaaatgtattttatcaaacaaaactgtgctacattttatctctggtaccctcaggatgacaaatcagagcaagatgacttgagtacattatttaccttcagaggcgaatgcatcaaaccagttgccgtaaTAAaagttgtgcactctcctcaaacaatagcatggtattttttcactgtactagctactgtaaattggacagtgcagttggattaacaagaatttaagctttctgcccatataagaccgTCCAGCGGGGGGAGGGGCGGCTGGAGATCACGTAGAGGTTAAAATGTTTAAACTTTTGATGTCGTCAAGTATAAATGTTTAACACGTTTTTTCTATTTAAAATAAACACCTTCCCACTGATGTTCTAGAAATAATGAAAATGAGGTTGAAATGTCATGTGCACTAATCTGAAATGTAATCCTCATAGCACATTGTGGCCTAGCACTTCCATTTTTACATACATCCATTTGCCCCTCATATGAAAGACAGCATTGGAGTCACAAGTGCCAACAGTTTGATTTTACAATGTCCATACTGATGTGAATAATAGATATCTCTTTAAGCCAGAATATGATTAGTTCAGCACGTGTCATTTCAGTAAGTAGCCCAAATAACCTGTCTCACCTGCAACGTTTTAACAGCATTGCCCTTAGTCATGAATCATGTATCCTATCTATTTGGAGCCTTTAGATGGATTAAAGCCAACTTTACATGAGGTGTAGGGATTTCATAATACTTATGAAGAAGCATGAAAAGACAGACATATTCCATTTTGGTAAGAATGGTTCCATTTAATTTACATTACTCCCGTGCCATGAGTTTCTGCTTCTTCAGCTTCTTCTGAGAAACCTTTTCTTAGTAGCGACTTCCTCCTCTGGTTTGGGAACGATCTGCTCCTTCTCTGTGAGGATCATCTCAATGTGGCAAGGGGAGCTCATGTAGGGGTTGATGCGACCGTGGGCACGGTATGTGCGTCTGCGCATCTTGGGGGCCTTGTTGACCTGGATGTGCTCGATCACCAGGGAGTCTACATCCAGACCCTTAAGCTCCGCGTTGCTCTCAGCGTTCTTCAGCATGTGGAGAAGGAACTCTGCACTCTTCTTGGGCCAGCGGCCCTGTGTCCAGTCAAACTGCTTGGCCTGCACACCTGCTGACACCCCCATTGTAGCGACGGAAGGGAACACACTGGTGCTTGATGGTAACATCTTTCAGGTACTTGGTGGCTTTGCGGATGTGCATGCCTTTGATGGTCTGAGCTGTCTCACGGGTGTTCTGATGGGAAACAAACAAGAAGCATTACTATAGTAGCTAGCTATATCAATAACAGATTGTTATAACTGTCTTGATAGGCATGAATGCAAAATTGCTcagttatttgttagatattgtcACATTTGATTCCAAAGGTCTCCAATGTTGTCATCATAGCAAAGCATCATACCTTTCAGCCTGCACACATTTATGACTACCAATACATACCAACCAACAGCAACTAACTCCCACACGGATACAACTACAGTGAACAAAATGTCTATAGGCAACTTCTCATGTGAATCAGAAAAGAGAACACCTTACCTTGAAGTGAACCCGGAGATTTGAGCCCCTCGACTTGCATGCTTCAGAAGAAAATACAGCAATGATCAGTAAGGTCACAACACAAGACAGAAATAACCTTACATGGTGAATAAACCATTTATGTGTGGTTGCTCAGCCTCGTTCATATTTCTTTTCATGGGTAATCTAAAGGTGTCCTAAGAAAGTCATCATTACAACCATGGTTAAGTCTGAtaagctagctaatttagctagttaacttgcaTTAGCGAGCTAATGAATAGATCCAGGGCAACAATCACACCGGTACTCACACTTAGTCGGGTTCTCGGGGTCGAGCGAGTAGCGGACCATTTTCAGAGATCTGCAAAAGATAAACGGGTTGTTAACTAGCCAACTAAAACTAGTCGGAGAACGTGTTACAGTGTGTTGCTTGACTGAGAAACAAGTCAGACACCTTGGAGGATGCGCTACGTGTTAGTTGATAGCTAGCAAACATTAAACCAACCCAAGACATCGAGCAAATCACATACGAATACATCACTGGGACTATGTATTTCATCAAGACTCATTCGTAGGGCCGGGGACGACATCATGGTCATGGTTTCGTTAGCAATGCTAAAAGTGGCTGGAGGCCAAGCATATCACAAATATGACTTTTGGTGAAAATAGCCACCGATACACGATTAGACGCCGGCGTTTCTAAGTAGTGGTTTAAATACATGTAAATTGAACGTTTAAGAGTCGTGATGCCATAGATATTAAAGCGATTACATGGATTCTCGGCCGCAGATGTGTATCGGCTCACTTACTTTCTAAGGCCGC
>TU452625
cAAAGCCGGTTGGatatactgtcaaattctctaaaacgacattggaggcggcttatggtaaagaaattaacattacattctctggcaacagctccgtTGGACATTCCTGATAtcggcatgccaattgcacactccctcaaaacttgagacatctttggcaGTATTCCACTTTAGAGTGGcttttaattgtccccagcacaaggtgcacctgtgtaatgatcatgctgtttaatcagcatctttatatgccacacctgtcaagtagATGGTTTATcttgcaaaggagaaatactcactgtttcagctcatgaaaatgagaccaacactttgtgttgtttatttttgttcatttaaaTAAATCATTGGTGTAGACTCATTTCCAAGTCAATGGATTAAAGGCCAATTCTGCCAATATCCTCATTCATCAactccagcaccaaaccagtaTCTACACGTGAACAGAGcttttctatgatctgtggttaaaaaggATTAGGTCCTTCAACAATGCTTGTCTTACATCACAGGGTAAGATTAGAAGTACATTTTCATAACCTGCAACAACTTTAGACCCCACATCACCTTAAATCAGTATTTGACAATCATTTTCCCcctcaattttcacctaaaattacaaacccaaatcgaactgcctgtagctcagaacctgaagcaaggatatgcatattcttgatagcatttgaaaggaaacacttaagtttgtggaaatattaaatgaatgtaggagaataacacacatTGGACCTGGTATAagataaaacaaaaaaacatgcattttctaTTTGTTgttccatctttgaaatgcaaatgccaggcgcaatttagattttggccactagacaacagcactgtatttgcaaagttttagactaatctaatgaaccattgcattactgttcaaaatgtatCAAGTCCCcccaaatgtgccaaattggtTAATTGATACATTTAAGTACAAAACTTTAGAGAACAtacaaatataatacattttgtgTTTATACTCTCAGTAATGTCATAAATGATGGCTAATTAGCTTCCCTACTGAAAATTCACCAACCTTGAGTTAGATGGGGGGGCAGACACAGCatgggttcaaactgtagaacccagttcctacattttaatataaaaatgtattttatcaaacaaaactgtgctacattttatctctggtaccctcaggatgacaaatcagagcaagatgacttgagtacattatttaccttcagaggcgaatgcatcaaaccagttgccgtaaTAAaagttgtgcactctcctcaaacaatagcatggtattttttcactgtactagctactgtaaattggacagtgcagttggattaacaagaatttaagctttctgcccatataagaccgTCCAGCGGGGGGAGGGGCGGCTGGAGATCACGTAGAGGTTAAAATGTTTAAACTTTTGATGTCGTCAAGTATAAATGTTTAACACGTTTTTTCTATTTAAAATAAACACCTTCCCACTGATGTTCTAGAAATAATGAAAATGAGGTTGAAATGTCATGTGCACTAATCTGAAATGTAATCCTCATAGCACATTGTGGCCTAGCACTTCCATTTTTACATACATCCATTTGCCCCTCATATGAAAGACAGCATTGGAGTCACAAGTGCCAACAGTTTGATTTTACAATGTCCATACTGATGTGAATAATAGATATCTCTTTAAGCCAGAATATGATTAGTTCAGCACGTGTCATTTCAGTAAGTAGCCCAAATAACCTGTCTCACCTGCAACGTTTTAACAGCATTGCCCTTAGTCATGAATCATGTATCCTATCTATTTGGAGCCTTTAGATGGATTAAAGCCAACTTTACATGAGGTGTAGGGATTTCATAATACTTATGAAGAAGCATGAAAAGACAGACATATTCCATTTTGGTAAGAATGGTTCCATTTAATTTACATTACTCCCGTGCCATGAGTTTCTGCTTCTTCAGCTTCTTCTGAGAAACCTTTTTCTTAGTAGCGACTTCCTCCTCTGGTTTGGGAACGATCTGCTCCTTCTCTGTGAGGATCATCTCAATGTGGCAAGGGGAGCTCATGTAGGGGTTGATGCGACCGTGGGCACGGTATGTGCGTCTGCGCATCTTGGGGGCCTTGTTGACCTGGATGTGCTCGATCACCAGGGAGTCTACATCCAGACCCTGTCAGAATAGAGCACAGATTAAACTGGTAAGCAAGTCAAATAATCCACATACATGGCCAGTTGTCTGTGGGATACAGTACTTAACTTTGACActtgtgggaattggcctataagTATAGAGCTAAATTACAATGTTTCTTACAAAATAAATACGAAAAGTACATGCAAAGTAAAGATTTGAGAATATTTGCATAAAATTCTGTCGCCAATTAGATAGGAACCTAGCTTATGAAGTACTTTGAGCTatcctagctgtgccgttgaaCTAGAGCAGGCACACTTGTAGTGGCTTCTTTTGGAACACAACAACGGTCTATTTTAAGTcccaatctgggtcaggtgggcatgatttgaaagcttgttccattgccaacatgactagctaagtaataaaataacattttgggTGTTAACCTTTCACAAGGTAATTCAGAGAAACA

Function

NR:

description
60S ribosomal protein L17 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU452629 False 2655 lncRNA 0.41 7 39617600 39624906
TU452630 False 3537 lncRNA 0.40 4 39617600 39624786
TU452625 True 2641 lncRNA 0.38 2 39621773 39624786
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110523784 LOC106609062 coding downstream 59359 39554978 ~ 39558241 (-)
lmbrd2b LOC106563747 coding downstream 67803 39529982 ~ 39549797 (-)
capslb LOC106563770 coding downstream 92046 39522323 ~ 39525554 (-)
trnal-uaa-2 NA coding downstream 152401 39465129 ~ 39465199 (-)
LOC110522934 LOC106563829 coding downstream 271742 39341016 ~ 39345858 (-)
LOC110523789 gpat3 coding upstream 137668 39762574 ~ 39773050 (-)
mrps18c mrps18c coding upstream 153005 39777911 ~ 39783326 (-)
LOC110522936 NA coding upstream 183907 39808813 ~ 39813908 (-)
LOC110523797 rxfp3 coding upstream 305587 39930493 ~ 39932649 (-)
LOC110522937 LOC105014731 coding upstream 507194 40132100 ~ 40169848 (-)
G399038 NA non-coding downstream 44275 39570517 ~ 39573325 (-)
G399036 NA non-coding downstream 49618 39567732 ~ 39567982 (-)
G398963 NA non-coding downstream 51881 39527658 ~ 39565719 (-)
G398965 NA non-coding downstream 67757 39521372 ~ 39549843 (-)
G398966 LOC106563758 non-coding downstream 96284 39519956 ~ 39521316 (-)
G399066 NA non-coding upstream 1786 39626692 ~ 39626920 (-)
G399079 nkx6-1 non-coding upstream 6808 39631714 ~ 39632582 (-)
G399080 nkx6-1 non-coding upstream 9294 39634200 ~ 39634681 (-)
G399393 NA non-coding upstream 168890 39793796 ~ 39793997 (-)
G399404 NA non-coding upstream 196015 39820921 ~ 39822192 (-)
LOC110522860 LOC106565786 other downstream 490804 39125473 ~ 39129083 (-)
G398487 NA other downstream 492441 39124485 ~ 39125159 (-)
G397500 cssa01h5orf42 other downstream 1392080 38224981 ~ 38225520 (-)
G397378 NA other downstream 1547626 38066275 ~ 38069974 (-)
G399742 LOC106563559 other upstream 569235 40194141 ~ 40201203 (-)
G399819 NA other upstream 653112 40278018 ~ 40282951 (-)
G400909 hsp30 other upstream 943301 40568207 ~ 40570604 (-)
G401044 NA other upstream 1230865 40855771 ~ 40858019 (-)
G401046 NA other upstream 1237226 40862132 ~ 40870205 (-)

Expression

G398962(LOC106563677) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 60.
End of interactive chart.

G398962(LOC106563677) Expression in each Bioproject

Bar chart with 21 bars.
G398962(LOC106563677) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
End of interactive chart.

Co-expression Network