Gene
RNA
| Item | Value |
|---|---|
| gene id | G399080 |
| gene name | nkx6-1 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048569.1 |
| NCBI id | CM023223.2 |
| chromosome length | 100798064 |
| location | 39634200 ~ 39634681 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| nkx6-1 | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in several processes, including detection of glucose; positive regulation of type B pancreatic cell development; and regulation of transcription, DNA-templated. Predicted to act upstream of or within several processes, including neurogenesis; regulation of axon extension; and regulation of neuron migration. Located in extracellular exosome. |
| description |
|---|
| unnamed protein product |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU452762 | True | 482 | lncRNA | 0.42 | 1 | 39634200 | 39634681 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110523784 | LOC106609062 | coding | downstream | 75959 | 39554978 ~ 39558241 (-) |
| lmbrd2b | LOC106563747 | coding | downstream | 84403 | 39529982 ~ 39549797 (-) |
| capslb | LOC106563770 | coding | downstream | 108646 | 39522323 ~ 39525554 (-) |
| trnal-uaa-2 | NA | coding | downstream | 169001 | 39465129 ~ 39465199 (-) |
| LOC110522934 | LOC106563829 | coding | downstream | 288342 | 39341016 ~ 39345858 (-) |
| LOC110523789 | gpat3 | coding | upstream | 127893 | 39762574 ~ 39773050 (-) |
| mrps18c | mrps18c | coding | upstream | 143230 | 39777911 ~ 39783326 (-) |
| LOC110522936 | NA | coding | upstream | 174132 | 39808813 ~ 39813908 (-) |
| LOC110523797 | rxfp3 | coding | upstream | 295812 | 39930493 ~ 39932649 (-) |
| LOC110522937 | LOC105014731 | coding | upstream | 497419 | 40132100 ~ 40169848 (-) |
| G399079 | nkx6-1 | non-coding | downstream | 1618 | 39631714 ~ 39632582 (-) |
| G399066 | NA | non-coding | downstream | 7280 | 39626692 ~ 39626920 (-) |
| G398962 | LOC106563677 | non-coding | downstream | 9294 | 39617600 ~ 39624906 (-) |
| G399065 | NA | non-coding | downstream | 12453 | 39620600 ~ 39621747 (-) |
| G399038 | NA | non-coding | downstream | 60875 | 39570517 ~ 39573325 (-) |
| G399393 | NA | non-coding | upstream | 159115 | 39793796 ~ 39793997 (-) |
| G399404 | NA | non-coding | upstream | 186240 | 39820921 ~ 39822192 (-) |
| G399422 | NA | non-coding | upstream | 215364 | 39850045 ~ 39850864 (-) |
| G399468 | slc45a2 | non-coding | upstream | 280267 | 39914948 ~ 39920781 (-) |
| G399470 | slc45a2 | non-coding | upstream | 289513 | 39924194 ~ 39926264 (-) |
| LOC110522860 | LOC106565786 | other | downstream | 507404 | 39125473 ~ 39129083 (-) |
| G398487 | NA | other | downstream | 509041 | 39124485 ~ 39125159 (-) |
| G397500 | cssa01h5orf42 | other | downstream | 1408680 | 38224981 ~ 38225520 (-) |
| G397378 | NA | other | downstream | 1564226 | 38066275 ~ 38069974 (-) |
| G399742 | LOC106563559 | other | upstream | 559460 | 40194141 ~ 40201203 (-) |
| G399819 | NA | other | upstream | 643337 | 40278018 ~ 40282951 (-) |
| G400909 | hsp30 | other | upstream | 933526 | 40568207 ~ 40570604 (-) |
| G401044 | NA | other | upstream | 1221090 | 40855771 ~ 40858019 (-) |
| G401046 | NA | other | upstream | 1227451 | 40862132 ~ 40870205 (-) |
