Fish Transcriptome and Expression Database

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model fish

XLOC_023331 (BX005057.1)

Basic Information

Item	Value
gene id	XLOC_023331
gene name	BX005057.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007135.7
NCBI id	CM002908.2
chromosome length	42172926
location	11411822 ~ 11411941 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046151
TGTGCCGGTCTAACTAGCTCTcttcaactctcacatggtcgctcgCTGAAGCCAAGCAGGGTTGCGCCCGGTCAGTGcttagatgggagaccacataggaaagcttTGTTGCTggcggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000084290

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00046151	True	120	rRNA	0.55	1	11411822	11411941

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_023329	myrip	coding	downstream	85973	11112113 ~ 11325849 (-)
XLOC_023328	chmp4c	coding	downstream	335422	11070110 ~ 11076400 (-)
XLOC_023327	CR753886.1	coding	downstream	342585	11058151 ~ 11069237 (-)
XLOC_023326	AL840641.2	coding	downstream	363262	11048446 ~ 11048560 (-)
XLOC_023325	AL840641.1	coding	downstream	400271	11011436 ~ 11011551 (-)
XLOC_023332	pxdc1b	coding	upstream	39136	11451077 ~ 11467549 (-)
XLOC_023333	prpf4bb	coding	upstream	57870	11469811 ~ 11506064 (-)
XLOC_023334	gli3	coding	upstream	116329	11528270 ~ 11821505 (-)
XLOC_023335	NA	coding	upstream	462396	11874337 ~ 11875212 (-)
XLOC_023336	tm9sf1	coding	upstream	475944	11887885 ~ 11908115 (-)
XLOC_023665	dre-mir-735	misc	upstream	26766020	38177961 ~ 38178027 (-)
XLOC_023324	dre-mir-7147	non-coding	downstream	463677	10948064 ~ 10948145 (-)
XLOC_023323	AL840641.3	non-coding	downstream	506536	10905172 ~ 10905286 (-)
XLOC_023320	NA	non-coding	downstream	911920	10497369 ~ 10499902 (-)
XLOC_023337	CU929203.2	non-coding	upstream	716564	12128505 ~ 12129456 (-)
XLOC_023338	CR855257.1	non-coding	upstream	743166	12155107 ~ 12156644 (-)
XLOC_023339	NA	non-coding	upstream	1184597	12596538 ~ 12601729 (-)
XLOC_023341	NA	non-coding	upstream	1329995	12741936 ~ 12746499 (-)
XLOC_023322	asap1b	coding	downstream	354517	10897768 ~ 11057305 (-)

Expression

Co-expression Network