G401176


Basic Information

Item Value
gene id G401176
gene name NA
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 41194317 ~ 41195659 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU455075
ATTTAATTTCTGGAGTGCTCTACTACTCACTTCAACCACCACCTTCAGAAGAGCATGGTTGAAGTGGGCACTGTGGTGCTCGTGTGAATTTCCTTTTTCGGCTTCAGATCtgcctacttctcacttaaaacaGTTTTTATGTTTCATATTTGTGTCAATGCAGCAGAAAGCATGTCTCAATACCTTTCGCACAGCTGACGCAATCTCATGTGTTCCGAATGAACACCTTATGGACATTGTCAACAGTCATGTGACGTGTTTCAGTCCCAGACTTCTTATTGGAGCACTGCTGCTTTACATGTTACATACTAACACGCAGCCTGGAGACACACcagggatctgtgtgtgtgtgtgtttatgtgtgtacagtgccttgcaaaagtattcatcccccctggcatttttcctattttgttgcattacaacctgtaattaaattgattttatttggatttcacgttatggacatacacaaaatagtccaaattggtgacgtgaaatgaaaaaaaatacgtATTTCAAacaattattaaaaaataaataaatggaaaagtgatgtgtgcaaatgtattcaccccctttgctatgaagcccctaaataagatctggtgcaaccaattaccttcagaagtcacataattagttaaataaagtccacctgtgtgcaatctaagtgtcacatgatctcagtatatatacacctgttctgaaaggccccagagtctgcaacaccaccaagcaagtggcaccatgaagaccaaggagctctccaaacaggtcagggataaagttgtggagaagtacagatcagggttgggttataaaaaaagatccaaaactttgaacatcccacggagcaccattaaatccattataaaaaaattgaaagaatacggcaccacaataaacctgccaagagagggccgcccaccaaaactcacagaccaagcaaggagggcattgatcagaggcaacaaagagaccaaagataaccctgaaggagctgcaaagcgccacagcggagattggagtatctgttcaTATGACCACTTTAAgatgtacactccacagagctgggctttatggaagaatggccagaaaaaagccattgcttaaagagaCAAATAAGCAAAAAGGCATGAGCGAGACTCcctaaacatatggaagaaggtactctggccagatgagactaaaattgagctttttggccatcaaggaaaacgcaatGTTTGgcgcaaaatccattttaattccaggttgtaagccaacaaaataggaaaactgCCAAGTGTGGTGAATACTTAAGCAAGCC

Function

NR:

description
PREDICTED: high mobility group protein B2 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU455075 True 1312 TUCP 0.41 2 41194317 41195659
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110523831 LOC106562676 coding downstream 89705 41090489 ~ 41104612 (-)
LOC110523830 brap coding downstream 124975 41056417 ~ 41069342 (-)
LOC110523826 LOC106562691 coding downstream 145025 41027818 ~ 41049292 (-)
LOC110523827 LOC106562714 coding downstream 175815 40995973 ~ 41018502 (-)
LOC110522943 pi4ka coding downstream 199649 40951812 ~ 40994668 (-)
LOC110523833 LOC106562596 coding upstream 17542 41213201 ~ 41254232 (-)
LOC110523835 LOC106562623 coding upstream 58864 41254523 ~ 41259174 (-)
LOC110523836 ptpn11 coding upstream 64158 41259817 ~ 41271627 (-)
LOC110523838 LOC106562583 coding upstream 117602 41313261 ~ 41329160 (-)
LOC118964606 NA coding upstream 153517 41349176 ~ 41354524 (-)
G401089 NA non-coding downstream 222117 40971129 ~ 40972200 (-)
G401081 NA non-coding downstream 248051 40945966 ~ 40946266 (-)
G401066 LOC106561157 non-coding downstream 288437 40905002 ~ 40905880 (-)
G401053 NA non-coding downstream 309914 40882180 ~ 40884403 (-)
G401048 NA non-coding downstream 323295 40862897 ~ 40871022 (-)
G401222 NA non-coding upstream 89647 41285306 ~ 41287049 (-)
G401231 NA non-coding upstream 109499 41305158 ~ 41305359 (-)
G401225 NA non-coding upstream 175264 41370923 ~ 41384210 (-)
LOC110523841 LOC106562568 non-coding upstream 217253 41411545 ~ 41414099 (-)
G401271 NA non-coding upstream 218614 41414273 ~ 41414482 (-)
LOC110523832 LOC106561151 other downstream 87530 41105411 ~ 41207218 (-)
G401064 NA other downstream 291071 40901808 ~ 40903246 (-)
G401052 NA other downstream 317724 40875812 ~ 40876593 (-)
G401046 NA other downstream 324112 40862132 ~ 40870205 (-)
G401044 NA other downstream 336298 40855771 ~ 40858019 (-)
LOC110523839 LOC106561138 other upstream 207077 41373889 ~ 41405792 (-)
G401190 denr other upstream 221458 41417117 ~ 41441989 (-)
plac8.2 plac8 other upstream 837712 42033371 ~ 42035641 (-)
G403104 NA other upstream 2349028 43544687 ~ 43548274 (-)

Expression

G401176 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 8.
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G401176 Expression in each Bioproject

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G401176 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
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Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G218215 NA non-coding CI01000051 null 2231062 ~ 2231269 (+)
eurasian perch (Perca fluviatilis) G130614 NA non-coding NC_053124.1 CM020921.1 1586481 ~ 1587358 (+)