XLOC_023339


Basic Information

Item Value
gene id XLOC_023339
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 12596538 ~ 12601729 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00047161
tgtctttagtttatcgcttttcctctaaaatagagacgaagcagaaggaaaataaatgaattgatgaatgaatgaaatgattgacgtttttatgcatgtgcGGTGCGGCTTGCTCACGACAAAGTCGAACGAGTGGCCGCGAGCTCCGGTGGCCGGTCAGAGCCAGCGCCCCACAGCAAACTGAAGAGATGCTGGATGGCTGCCAATATATGATAGGAATTCTTCCAAAGTTTCAGATGATATCTGggcttgtgcataataatgtaaaatgaaagtgaaagtcatgacatttggccaagcataagaatagcctacaaaagtgtttcgattattatattaatcaagTCTGTAAGATTCCCCTAAattaggcaccagattcagcaaagttcagcaggtcgacccggagacatgagaagagaccaaactgtagttagaatggtttattctgcaagTCTAACACACACAGGATGAGCAGGGATAGATATACATAGTGGGCTGACCTCTAAAAGTTACACAACAGCAGGAAGACACTCCTAATATGGGCATGCTATACAAGCAACATAAAGAGGAAATGTATAGCGCGGGACTTTCCACTGTGGGAGCAGCTTGCAAGACTGAAACCAGACGTTGACCTTAGACCTccgatgcacacacatacacacacaaaaccacaggAGCTTCTGCTTCTCATGCAAGCACACTTGAAAGAGGACAAAATGTTCTCTCAGTCCCCTCTTTTAGGCCAAAGGCCTAACGCAGAGGAATCTTATCATACCGTTGACCCATCATACTGTCCATTGTGGCATAGATTCGATTCATTAAACATTGCAAGAGAAAAGGACCACAACAACAAATAAGaaggaaaataatacatacaggAATTATCATTGTAAGAAAAGGAGTCACCCAGCCGAACAGACCCGTCATCCAACCCCATGTGGTGTCTGGGACATAATCTGAAGTCATGGCAATTTTTAACCCTTGGAGAGTAGACATAGCAGTACTCATTTACGTACCCCCCCCCCCTGGGATGCTGTTAAGAGATCTAGAGCCATTCTATTTTGCAAAACCATGGTACGTAAGTTTCCAAGTTCCTTATTCTGGGCTTCATTAATTATTTTGGAGGCATTTAGGAATAGGCCCATGCGATAGTCTAGGGTTTCAATTCTCAATAAAGCTTTTCCCACACCTATCTGGGGAAACAGGGCTAGTGCTACCTTACTTCCTGTGGTCCATAACTTAAAATCCCCTGGCACATCTGACCCCCAGACTGAGTCATGGGGCTTCATCTCAGGGATACTGCGCCTGCCCATGCGATGGGGTGTCATCAATTGTACTGTGACAATAAAGGTGTGATCAGTCACATGTATAGGTGCACACTGACCAGTCCAATTAGCAGGTAGTGACATGTAGGCGTTGTTTCCACATAGCCACCATCCACCCTGGACCACATAGGTGCCATTCGAGGGGTTAGCAACATCGTTGGGGGCCCCTTCCCCTTGTCTCCATATCTGACCACAGTTTGTGGTATTGCCCATGAAGTGAGTGCCGTTAGTCTGTTTATAGCACACAGGGTGAGTAAGGGATTGGTTAATGAAAACCTTGTGACCTACTGGTGATACCTTTGCGTGACCAAATTTGACCCAAAATAGTGCATCGCATGTGCCATTTCTAAGGCCAGGATATGGTTTAGTATCATCTATTACTATGGAACTGTGCTGGTACCCAGATCCTGCAAAACTGGCAAAACACTTAGCAGATGTTTTATTCATGGGTTTTGCATAAAGAGGGGTTTGCTTGGCTGAATGAGGCATAACAGAACATACATAACAACCAGATACATTATATGACCTAGCTAAAACTCATTTACATATTGATACCACATATTATTTCAATTGGATTGTCAGCCCCATCCTCTGCCCATCCAAATTCATGATCATGTGTCCAGCGTTTCAGCCTGGCTGCATTAGCTTGAGCAACAAGAAAGAGAAACAGTCCAATTGTCCACAGCAAAAAGGAAGTCATGCTGACCCCTGCTCTAGGATATCCAGACACGGTTGCGCGGTTGCAGAGGTGTCAGTTGTGCTGAGGGGGCCCCCAAAATCTGTAAAACAAAGAGAGTCTGCAGACAGATTATCATAGTAcaaaacttatacatttttattattcaataggtGCTCGTTTTATCCTGGTTGCATGGATCCACTGTGGAGAAGAGGAGGTTAAAACGGCGGTTCTGGTTACAGCCACGACATCCGTCGGGGGGCCATATTTGGGGTCCCCCAGTTCTGTGCTCATTTTATTGAACTGTCTAATCATTACTCTGTCACCGGCCTTAAATGGGTGTGTTGGGTCTACCGGCATCGGGGCTGAACCAGAATGTATGTTAGTCCAGTATGCATGCAATGTTGTTAGTAACTGTTGTGCATATTCACTCATATGGATATCCAAAGAACCGTCACCCAGTGTGGTACCCCTTTGCCTCCATGGTGAGGGAAAGGGTCGTCCCATCACAGTCTCATAAGGAGAGAGACCGTGAAGACTTTTGTGAGGAAACATCCTCATGTCTGCTAAAACGACAGGTAGCAAGGCGAGCCAATTTGAGTGCCCTGCATGTTACATAGCCTTTCTTAATTTGTCCTTAATAGTCCTATTAGTTCGTTCTACTATACCAGATGATTGTGGATGGTAGGGAATATGTAGCTGCCAATTAATTTGGAGTTCTTTAGCTAGATTTTGTATTACTTTCGCAGTAAATGAGGTTCCCTTATCTGAGTCTATGGCACATGGTATACCATATCTTGGAATGATTTCTCTTGTCAAACATCTGACAACTGTATTAGCATCTTCCTTACTGCATGGGAAGGcttcaacccattttgaaaatttgtccACAAAAACCAGTAAATATTTATTAGGACCCCTCTTTGGCAGATGTGTGAAATCTACCTGCCATTCCTGAAAAAGTGTTTCAGGAAGGGGCAATTGTTGATGTTTAGCTTGAGGTTTAGTGATATTGTTTTGAGCACATATCAGACATCTATCTAAGGTGTTATTAACATGATgttgtaaattataaattattaatgcaCAAAAAGgaactcattgtgtctattacCCCTCTTCGGCCGCGGTGTGTAACACCGTGAAACTCGCGGACGAGAAAAGGAGCACATGATGATGGGAGGCATAAACGGCCTTTACCATCTAGCATTATACCATTAGGATCAGTCGTGGCGTCACATTCAGACCAGTAAGTATGGTACTAAGTATTTAGTAAGCTGCTGTTTTAGATGTGTCAGGAGCTCCTCCTGATCATCTTTCCACGCGAGGCGTGTTTTTATACGAGTGCGTGTCTTTTTACCCTCATCGGTTTCTTCCTTAATTGTCTCTGTGTGTACTATATCATGCTTGGGATCAAGAGCAGGTATTTTTGTTGTCATTTCGTCATCGTCATAGGACGAACCCATTTTGGTTTGAAGGATAAATCGATAATCTGCCCCAATTAGTTGGCAGTGACGCGAACTGCGCAACAGCATGTCTACAAATTGCAGTGGTTTGTCCACTTCGGGCAGAAGAGATATGAGATCTTTAAGAACAGAGGGTGAAGGGGGAATTATTTCTATCCCTCGTGGTTTAGCAACCCACACCGCAGCCACATTAGAGGCTGAGGCAGCGCCCTCAGTGCCGTCAGGAGAGTCTGCCTTAGTTTTAATCATTTCTGTCAGTGACGGGTAAATAGAAGGCACTGTAGGAGAAGCACTTACAGAGCATGAAATAGATTGCGGAGGCCCCGTATAAGGGGGTGGTGACGTCATGGTGGTTTTAGCAGCTGCAAGAGAGCCCCTCTTATCTGCCGTAAGGGCAGTGTTACTTCGGCTTTTGGGTTTGGGGACAGATTTCAAAACAGTTTTGGGTGTAAAAATGCCTTTTTTATCCCTCCATATAGAACTCATTTTATACCATGTGTCATATCCATTCATCATATATTGGTCATTCCATTCTGGATCCCCATATCAATTTGTAAGCTAACTGAAGGAAACCTGGGTCAAATGTTCCTTCCCTAGGAAAGTCTCTCCATTGAGATTGTCCCTCTGTTCACCCAGCTAAATTGGACAGCCAGGGTTCAGTGTAAAATCCCCAcccacatctatccatccattgctTTGGACTCTCACTGGGTTCTGGTTTTGGATATCCTTGTCCCATATTGCTGAAGCTGGTGCGTAAtacttatttactaaaatttattaaatcccctgatttgtggaacccaaatttaatTGAGTACGACAACACAAATCCTTCTGTGCAATTTACTGTTGAAAGTAAACTTGACAGGATATTCTGTGCTCTAGAGCACAGACCTCTCTTGCTTGCGCAACccaattttaattaaaatcttaCGATTTCCTGAGATACACCGGAGCAGGCAGTGTGAATAAAAATTCTCTTACCTGATCAGatgtatcccggacgagcccccaagtcTGTAAGATTCCCCTAAattaggcaccagattcagcaaagttcagcaggtcgacccggagacatgagaagagaccaaactgtagttagaatggtttattctgcaagTCTAACACACACAGGATGAGCAGGGATAGATATACATAGTGGGCTGACCTCTAAAAGTTACACAACAGCAGGAAGACACTCCTAATATGGGCATGCTATACAAGCAACATAAAGAGGAAATGTATAGCGCGGGACTTTCCACTGTGGGAGCAGCTTGCAAGACTGAAACCAGACGTTGACCTTAGACCTccgatgcacacacatacacacacaaaaccacaggAGCTTCTGCTTCTCATGCAAGCACACTTGAAAGAGGACAAAATGTCCTCTCAATGACATATGTCATGCTTGGGcttatatgaataacacctcgctgtttaccatttccgaaagtggagctgacgtcggcgagaaattgcttgtataattgtaaaaagagtgatgaatattaatggatttcttatatctgtcatttctgataatataattgatttagtGTGAGCTAATGAGTTTCCAACacagcaaaaatgcatccagaatcc

Function

GO:

id name namespace
GO:0030178 negative regulation of Wnt signaling pathway biological_process
GO:0007049 cell cycle biological_process
GO:1903047 mitotic cell cycle process biological_process
GO:0006259 DNA metabolic process biological_process
GO:0006260 DNA replication biological_process
GO:0006261 DNA-dependent DNA replication biological_process
GO:0043596 nuclear replication fork cellular_component
GO:0043601 nuclear replisome cellular_component
GO:0005657 replication fork cellular_component
GO:0005658 alpha DNA polymerase cellular_component
GO:0030894 replisome cellular_component
GO:0051539 4 iron, 4 sulfur cluster binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00047161 True 5081 lncRNA 0.43 2 12596538 12601729

Neighbor

gene id symbol gene type direction distance location
XLOC_023338 CR855257.1 coding downstream 439894 12155107 ~ 12156644 (-)
XLOC_023337 CU929203.2 coding downstream 467082 12128505 ~ 12129456 (-)
XLOC_023336 tm9sf1 coding downstream 688423 11887885 ~ 11908115 (-)
XLOC_023335 NA coding downstream 721326 11874337 ~ 11875212 (-)
XLOC_023334 gli3 coding downstream 775033 11528270 ~ 11821505 (-)
XLOC_023340 pdcd6 coding upstream 27920 12629649 ~ 12689571 (-)
XLOC_023341 NA coding upstream 140207 12741936 ~ 12746499 (-)
XLOC_023342 cox19 coding upstream 145648 12747377 ~ 12749116 (-)
XLOC_023343 ipo4 coding upstream 152284 12754013 ~ 12832499 (-)
XLOC_023344 pck2 coding upstream 318290 12920019 ~ 12938922 (-)
XLOC_023665 dre-mir-735 misc upstream 25576232 38177961 ~ 38178027 (-)
XLOC_023331 BX005057.1 non-coding downstream 1184597 11411822 ~ 11411941 (-)
XLOC_023326 AL840641.2 non-coding downstream 1547978 11048446 ~ 11048560 (-)
XLOC_023348 NA non-coding upstream 456938 13058667 ~ 13125473 (-)
XLOC_023349 NA non-coding upstream 622519 13224248 ~ 13245885 (-)
XLOC_023352 NA non-coding upstream 753549 13355278 ~ 13357652 (-)
XLOC_023354 CR450741.1 non-coding upstream 1007869 13609598 ~ 13609714 (-)

Expression


Co-expression Network