XLOC_023344 (pck2)


Basic Information

Item Value
gene id XLOC_023344
gene name pck2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 12920019 ~ 12938922 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046168
GATTGACTTCAATGTCAATTGCTCCATAGCATCAAACTAAAGCTTCCTGAGACTGAAATGCAAAAGCTAGTTTTTCCACTTTGTCGTGTATTATTAGAATCGCACCATTATTTTATAACTCTACATTTTAAGATATGTTGACCGCCTAGCAGGCTTGTaggctttatttattattaaaacatctCAGGCTGAACTGCAGCGAGAACAGCGAGTCGTTATTACTGCAGGATCTGAGGTGAGGGTGGGATCAGCTGATTAGAAGTTTACACGTGTTACAGTGCAAGGGTCTTTACCTCAGGAGTTGGACTATCACTCTCTCCAGTGTGATATGAGAGGTGCACAGGACTGAAGAGGAACAAGCCACCCCTCTCGTATTGCTTTCTTTTATCGTTTTTCTCTCTGTAAAGCCACAATATCTTGTTTGCTCCACCAATTTCACCTGCACCAAAGATGTCCTGCCTGTTGCTTGGAGTACTAAAGAGGCGAAATGCCATCAGCACAGCTTCAGTGGGAGTGCGGTCGCTCGCCTCCATCCCCTCTCTGCCTCCGTCAGTGGCAGAGTTCGTGTCAGGCGCAGCGGCTGAATGTAAACCTGCTAAAGTGCACGTGGTCACAGGCACACCAGAGGAGACAGCAGACCTTCTGGCCAACCTGGAGAAAGAGGGCATGGTAAAGAAGCTCGCCAAGTATGAAAACTGCTGGCTGGCACGTACTGACCCTAAAGATGTGGCTCGGGTGGAGAGCAAGACTGTGATCGTTACTAAGAACCAAAGAGACACCATTCCTATCCCCAGCGGAGGTGTTAAGTCCCAGTTGGGTAGCTGGATGAGTGAGCAAGACTTCCAGAAGGCTAGAGAAGACCGCTTTCCTGGCTGcatggcagGACGCACTATGTATGTGATCCCCTTCAGTATGGGCCCAGTGAACTCTTCTCTTGCTAAGTTTGGTGTTCAGGTGACAGATTCTCCCTATGTGGTGGCTAGTATGGGCATCATGACAAGGATGGGGACACCAGTGATGGAGAAACTTGCACAGGGAGCAGAGTTTGTTCGCTGCCAGCACTCTGTGGGCAGACCTTTACCACTTAAAGGCCCTCTAGTAAATAGCTGGCCTTGTAACCCAGAGAAGGTGTTGATATCACATCTTCCTGACACCAGACAGATCCTGTCCTTCGGCAGTGGTTATGGTGGAAACTCGCTCCTTGGAAAGAAGTGCTTTGCTCTTCGTATTGCCTCACGCATCGCCAAAGACGAGGGCTGGTTGGCTGAACACATGCTGATTCTGGGAATCACAAATCCTCAGGGTGTAAAACGGTACATTGCAGCAGCGTTCCCAAGTGCTTGTGGGAAAACCAACCTGGCCATGATGAAGCCATCTCTACCAGGATGGAAGGTTGAATGTGTGGGGGATGACATTGCCTGGATGAAATTTGACAGTCAGGGTAAACTCAGAGCAATCAATCCAGAGAACGGTTTCTTTGGAGTTGCCCCCGGGACGTCCCTAAAAACCAACCCTCATGCCATGGAAACCATCTCCAGGAACACAGTGTTTACTAATGTGGGAGAGACCAGTGATGGAGGAGTGTGGTGGGAGGGTCTGGAACCTCCTGCACCAGGAATCAAACTGACAGACTGGCATGGGAAATCCTGGAAGTATGGTGATTCTACACTGTGTGCTCATCCAAACTCCAGGTTTTGTGCCCCGGCTGGCCAGTGCCCCATTATAGACCCTCTCTGGGAGAGTGATGAGGGCGTCCCCATTGATGCTATTGTATTTGGAGGGAGAAGGCCAGAAGGTGTGCCTTTGGTGTATGAGTCATTTAACTGGCGTCATGGTGTGTTCGTTGGTGCAGCTATGAGATCTGAATCCACAGCTGCTGCTGAACATAAAGGTAAAGTAATCATGCATGACCCCTTTGCCATGCGTCCTTTCTTCGGCTACAACTTCGGCGACTACCTTTCCCACTGGTTGAGTATGGAGACACGCAAAGGCCCAACTCAGCTCCCTAAAATCTTCCACGTCAACTGGTTCCGGAAAGATCAGAAGACTGGCTCCTTTCTGTGGCCAGGATTTGGAGAGAACGCCCGTGTCCTTGAGTGGATCTTCAAACGATGTGGCCGTACCAGTGAAAACGAGGCTGCCACCAAGAGCATTGTGGGATGGATTCCACAAAATGGTGCCATAAACACAGAAGGCCTGGGTGGGAATATCGATATGGGTGCCCTCTTTGACCTGCCCAAACCCTTCTGGCAGAAGGAAACACAGGAGCTTCGGACCTACTTTAACCAGCAGGTTGGAGCTGATCTTCCTGCTCAAGTTGAAGGAGAGCTGAAGGCACTGGAGGAGAGAGTGAGGGATTGAACAGACACTATCACAGTAGATGTGAGAAATATGATGGGTTGAGGTGGAGGTAACTGTTTTATTGTGACTGACTGTTGCACTGCAGTGAATGCTGCATCTGAGAAACCAAATACTTCACTAGATGCCTTCTGTGGTATCAGTACCTTAGTGCCTTTTTTATCTTACGGTAGAAGCTAAAAActctatttaatgtttacaagtTATTTCccaaaatgccattttagatTATCCCCAACAAACATTTATTGTGTTTAAATTTCATCTAATAAACATTGGTGTCTAATAGACATTCAATCATAGACATCTAATAGAAATCCACAGATTGGTGTCTTATAGATATCCAAACATAGACATTTAATAGACTTCCAAACACTGGCGTCTAATAAACATTTAAGCATAGActtctaatagacatccaaatactggcatctaatagacatctgaacatagacgtctaatagacttCCAAACACTGGCATCTGACATCCAAAAATAGAGGTCTCATTAGGATATTGAGACTTATATAACTAACAACAGTGcaaaaatagactagtcatcaaaaagACAGCATGTGAAATATGCCTAATATGTatttttgatgactagtctattttgGGCTAACGTCTTTTTCTGGATGTCTATTATCGATCTATGTTAAGATGTTTAttagatgttttattttgaaacacaaaactGCTTGGTGGGTCATTTTAGATTAAAAATGTCGACATTATGAATTTAAACCACAACATCATTTTAAAGTGATGATTTGTCAGAACACTACATAATAGCTCATAATAGCTTGAGCAAAAATATCAGACATGCAATTATGAAAAGCACCAATAACATATAATTTGTGCTTTTACTGGTAACCTAATGAactttttgaatttttatttccaaagaATTTGCCTTTTATCAGTTGAATGTAATTTGATGTGATTCAGGTTGAGCTAAGGTTGAATGATGGACCAAAGAGGACCGCCCAGTCTTATTCAGTGAATGTTCCTGTTTTTACCTGAGCTGGCCAAATAAATACAACTGTAAATCAAA

Function

symbol description
pck2 Predicted to enable manganese ion binding activity and phosphoenolpyruvate carboxykinase (GTP) activity. Predicted to be involved in several processes, including cellular response to hormone stimulus; gluconeogenesis; and monocarboxylic acid metabolic process. Predicted to be active in cytosol and mitochondrion. Is expressed in extension; intestinal bulb; liver; and yolk syncytial layer. Orthologous to human PCK2 (phosphoenolpyruvate carboxykinase 2, mitochondrial).

GO:

id name namespace
GO:0071549 cellular response to dexamethasone stimulus biological_process
GO:0032869 cellular response to insulin stimulus biological_process
GO:0019543 propionate catabolic process biological_process
GO:0071333 cellular response to glucose stimulus biological_process
GO:0006090 pyruvate metabolic process biological_process
GO:0006094 gluconeogenesis biological_process
GO:0046327 glycerol biosynthetic process from pyruvate biological_process
GO:0033993 response to lipid biological_process
GO:0070365 hepatocyte differentiation biological_process
GO:0042594 response to starvation biological_process
GO:0005829 cytosol cellular_component
GO:0005739 mitochondrion cellular_component
GO:0030145 manganese ion binding molecular_function
GO:0005525 GTP binding molecular_function
GO:0017076 purine nucleotide binding molecular_function
GO:0004611 phosphoenolpyruvate carboxykinase activity molecular_function
GO:0004613 phosphoenolpyruvate carboxykinase (GTP) activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2266 Predicted to enable manganese ion binding activity and phosphoenolpyruvate carboxykinase (GTP) activity. Predicted to be involved in several processes, including cellular response to hormone stimulus; gluconeogenesis; and monocarboxylic acid metabolic process. Predicted to be active in cytosol and mitochondrion. Is expressed in extension; intestinal bulb; liver; and yolk syncytial layer. Orthologous to human PCK2 (phosphoenolpyruvate carboxykinase 2, mitochondrial).

Ensembl:

ensembl_id ENSDARG00000020956

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046168 True 3414 mRNA 0.45 10 12920019 12938922

Neighbor

gene id symbol gene type direction distance location
XLOC_023343 ipo4 coding downstream 87520 12754013 ~ 12832499 (-)
XLOC_023342 cox19 coding downstream 170903 12747377 ~ 12749116 (-)
XLOC_023341 NA coding downstream 173520 12741936 ~ 12746499 (-)
XLOC_023340 pdcd6 coding downstream 230448 12629649 ~ 12689571 (-)
XLOC_023339 NA coding downstream 318290 12596538 ~ 12601729 (-)
XLOC_023345 CR405710.1 coding upstream 15567 12954489 ~ 12958668 (-)
XLOC_023346 dcaf11 coding upstream 24197 12963119 ~ 12983829 (-)
XLOC_023347 CR405710.2 coding upstream 31197 12970119 ~ 13002993 (-)
XLOC_023348 NA coding upstream 119745 13058667 ~ 13125473 (-)
XLOC_023349 NA coding upstream 285326 13224248 ~ 13245885 (-)
XLOC_023665 dre-mir-735 misc upstream 25239039 38177961 ~ 38178027 (-)
XLOC_023338 CR855257.1 non-coding downstream 763375 12155107 ~ 12156644 (-)
XLOC_023337 CU929203.2 non-coding downstream 790563 12128505 ~ 12129456 (-)
XLOC_023335 NA non-coding downstream 1044807 11874337 ~ 11875212 (-)
XLOC_023352 NA non-coding upstream 416356 13355278 ~ 13357652 (-)
XLOC_023354 CR450741.1 non-coding upstream 670676 13609598 ~ 13609714 (-)
XLOC_023356 NA non-coding upstream 1503032 14441954 ~ 14445136 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000018_00029420_00038887 PCK2 coding CI01000018 null 28870 ~ 38887 (-)