XLOC_023345 (CR405710.1)


Basic Information

Item Value
gene id XLOC_023345
gene name CR405710.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 12954489 ~ 12958668 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046169
ACAGAAAGCAGCTGAGAAAACAAGAGGGAAGCCAAAAAAACGCTGCTGACATAGTAGAACAGGCTTGTTACTGTCTCTCAGTTTCTTCTCTTATAGTGGATTTGTTGGACAGTCTGTGGAGCTTCTTCTGCCCTGAGAAAACCAAGATGGATCTTACGGAGATGCTTTACAAAATCAGCAGATTTCTGCATTGGGCTCTGGTGTGGTTAAGTGATCTCACAGCTGGAATACTTGCTCATCGGTTATTCAGGCAGCACTTTCATTTACTGCTCTCTGTGTTGGTTCTTTTCGGACCTCTTCTGAGTTTTTGGGTCTCCAAGTACAGCATATTTTGCAACAAGAACCACTACCTGTACAGGCTATTCCTTCAATCTTGCTTTGGCTGGACCTGTATTTTCGGGGGCTCTTTCGTCTTTCTGTTGTCCTTCAGCATCAGCAACTCTATCCTCCACTCGCTCCGTCATCTCTTACCTTTCGCAGTATCCGGGAGTCTCTGGACGCTCCTCCGCCTTTTGCTGACCTTCCTTGTGGATGCTTCTGGAAGCTGTTTTGAGCCGCTAATAAGCCCAAATGATGCTCACAGGAACCCTGAAGAGCTCTTGAACTTTAAGGAAGGCCCTTTATTACTGCTGAGAGGGGTGGAAAGTAAAGAAGCCTGTCTGAAAGGAGGTCTAAAATGGCAGGGATGTGAAGTGTCGCATGAAATCCTGATTCTGACTTTCTGTTGTTTGCTTCTTTCTGAGGAAATATCCGTGTTCTGGTCCTTCATTGGTTTTGGAAAGCCTCTCGGGGTGCCGTTGAGGATCATCTtcatgttgtgtgtgtttttgatgaGTCTCTGGATGTTCCTGATCCTCTGTTTGCTGGCACACTTTCCGCTCTTCCCTTCTCAGCTGGTCGGAGGTGCTCTTGGGTATCTGGGATGGAAGGGGCTTTATAAGGGCTGGGGGGGTTGTAAGCCTGGATGGTGTTGTCTTGGAATAACAGGTTGTCAATCAAGTGGGCATTACacagttaattaattaatcaattaatgacCCCCACGCCTGCCTGttacatttcaattattttaaaacataattaattagggtaattatgcaagtaattgtataacaatgtttgttctgtagctaattTGAAAAAAAGGCTAATATTAGGCTAATATTAATATTGatctttaaatggttttaaaaaataaaagaagctgccaaaaaattataattataggaATATATTATCATATTAAGGGAATATTGTGAAGAGTTTCTAAACATGTACATCATGTGAATATATGTTTCACATAGAgagctaaaaatatatatataatgcctgTAAAGATCAAGTTTGCATTTTGTACATAGAGAATGATAAGCcccctttaaaatttaaatttcacagtatgtatgataatattttttcctctggaaaaaaatgtgtttgttttatttcggctacaataaaagcagtttttaattttttaaacatcattttagggataaaattattagcccctttaagctatattttttctcgataatctacagaacaaaccactgttatacaataacattcctgattaccctaaccttctACTTAActtaatgaacctagttaagcctttaaatgtctctgtaaGCTGTataggtgtcttgaaaaatatattatttaatgtcatcactTGATCTTTACAAgcatttataatttaaaagtaagtatttttttCACTTGACCTTTTCAATAAAAACACAAGTGAC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000108683

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046169 True 1754 mRNA 0.38 2 12954489 12958668

Neighbor

gene id symbol gene type direction distance location
XLOC_023344 pck2 coding downstream 15567 12920019 ~ 12938922 (-)
XLOC_023343 ipo4 coding downstream 121990 12754013 ~ 12832499 (-)
XLOC_023342 cox19 coding downstream 205373 12747377 ~ 12749116 (-)
XLOC_023341 NA coding downstream 207990 12741936 ~ 12746499 (-)
XLOC_023340 pdcd6 coding downstream 264918 12629649 ~ 12689571 (-)
XLOC_023346 dcaf11 coding upstream 4451 12963119 ~ 12983829 (-)
XLOC_023347 CR405710.2 coding upstream 11451 12970119 ~ 13002993 (-)
XLOC_023348 NA coding upstream 99999 13058667 ~ 13125473 (-)
XLOC_023349 NA coding upstream 265580 13224248 ~ 13245885 (-)
XLOC_023350 rdh10a coding upstream 292812 13251480 ~ 13272843 (-)
XLOC_023665 dre-mir-735 misc upstream 25219293 38177961 ~ 38178027 (-)
XLOC_023339 NA non-coding downstream 352760 12596538 ~ 12601729 (-)
XLOC_023338 CR855257.1 non-coding downstream 797845 12155107 ~ 12156644 (-)
XLOC_023337 CU929203.2 non-coding downstream 825033 12128505 ~ 12129456 (-)
XLOC_023335 NA non-coding downstream 1079277 11874337 ~ 11875212 (-)
XLOC_023352 NA non-coding upstream 396610 13355278 ~ 13357652 (-)
XLOC_023354 CR450741.1 non-coding upstream 650930 13609598 ~ 13609714 (-)
XLOC_023356 NA non-coding upstream 1483286 14441954 ~ 14445136 (-)

Expression


Co-expression Network