XLOC_023346 (dcaf11)


Basic Information

Item Value
gene id XLOC_023346
gene name dcaf11
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 12963119 ~ 12983829 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046170
GCAGGCGAGTCTCGAGACCGTAAACAACATGGCGCGTCACGAACCAGGAGAGTCTTAAAAACAACTCAGGGAAGCAGCGGCGCTAAGCTTATTGAACGTACAGGTATATAAACTTAGTTTTTGCAAAcactattttctgtttttttaacgAGGTCTGCAGGAACAAACCAACGGGTAAAAGAGCTGTCAAAGCGCTGTTACCATTTAACTGACAATCAGTCTATGGGCTCTCAGTCCAGTTCTGGGATGTCCGGTCGGGGCTCTGGCAACAACCCAGACCAGTCAGAACCAGAAGCCAACCAGAACGCCAATCAGACGGGTCGTACACAGGCTGAGAGACAGTCAGGATCTGAAGAGGACGTTGACTTAGCACAAGTTCTGGCGTACTTACTGCGAAGGGGCCAGGTACGTCTGGTCCATGGAAGTGGAGCAACAGGCCTACAGCTTGTGCAGTCATATTCAGACTCTGATGAGGACAGTGATGGGGCTTGGGATGGGAGGTTAGGTCATCGATATGACCCTCCAGTGGATGCTCAACCAGACACACAGGAGGTGGATCGCAGCGAGATCCACACTCAGATCCTACTGGCTACTGCTTCCTCTGGCTTAAAGGGCAGACACAGTTTCACACATATGCTGGCTGAGCGGGAACAGGGGCGATGTCGTGGGTCAAGTTTCTCTCATGGAGAGTGCAGCCGTATTCGTTCACATTTTTTGCCCAATcatgtggtttacaaggacacttATCAGCAGAAAGTATTTTGTGGAGTCTACAGTGATGAGGGAAATATGTTCCTGTCTGCATGCCAAGACCAGAATATCAGGTTATATGACACTAGTAGGGGTCGTTTTACTCTGAAGAAGACTGTGAAGGCCAGAGACGTGGGTTGGAGTATTCTGGATGTTTGTTTTACACCTGATGCACGATGTGTGCTGTATTCCAGTTGGTCAGACTACATCCACGTGTGCAGTGTAGATGGGGACAATGAAACGCACACCGCTCTGGACCTCAATCCTGATGAACGGAGGTTCTGTGTTTTCTCACTGGCAGCATCCACAGATGGAAAAGAAATCTTAGGCGGTGCAAACGATGGCTGCCTTTATGTGTTTGATCGAGAGCAAAACAAAAGAACACTAAAGATTGACGCTCACGAGGATGATGTGAACGCCGTGGCATTTGCAGACAGTTCATCGCAGCTGCTGTTCTCAGGCAGTGATGATGCTCTGTGTAAAGTGTGGGACAGACGAACACTCAGAGAGGACAGACCACAACCTGTGGGACATCTGGCTGGACACAGAGATGGAATCACCTTCATACACAGCAAGGGTGATGCTCGGTACTTGATCAGCAACTCCAAAGATCAGACCATCAAGCTGTGGGATGTGAGGAAGTTTTCACCAAAAGAGGGACTTGCGGCTTCACGACTCGCTGTAACACAACAGAACTGGGACTATCGCTGGCAGCAGGTTCCCCAGAGAGCACTGAAGAGGCATAAGCTGACCGGCGACACCTCTGTAATGACCTACAGGGGTCATGGGGTTCTGCACACACTCATTCGCTGCCGATTCTCCCCTGAATTCAGCACTGGGCAGAAGTTTATTTACACAGGCTGTTCAACAGGCAAAATAGTCATCTATGATGTGTTGACGGGAAGCGTTGTGTGCAAATTGTCCAATCATGATGCTTGTGTGAGGGACGTCAGCTGGCACCCGTATAACAACAACATGGTCAGCAGTTCATGGGATGGTGCCATTCGTTTGTGGGAACACACACAGAACCACCTTCTGGACAAGGACAGAGAGAGGATGAATGTGGATGTGGTGGACATGAAGAGAAAGGGCTATTGATGATTTCAGAGGTAGAAGGTGCCGTAACTGGAGGAATGGGATAATCGAGGGATGCTATAAAAAGAGAAcaaatgttgtgcagagaattacATTGCTGTAGTGTTAGGCCGGATCTTCAAGTGCTGTCTGTTTGATTCCACTTTGCTCAGGCAGTacaaaaaacatgattaaaactaTAAGGATTGGTGACGTTTAGTTAATGGA
>TCONS_00046172
CGAACCAGGAGAGTCTTAAAAACAACTCAGGGAAGCAGCGGCGCTAAGCTTATTGAACGTACAGTCCAGTTCTGGGATGTCCGGTCGGGGCTCTGGCAACAACCCAGACCAGTCAGAACCAGAAGCCAACCAGAACGCCAATCAGACGGGTCGTACACAGGCTGAGAGACAGTCAGGATCTGAAGAGGACGTTGACTTAGCACAAGTTCTGGCGTACTTACTGCGAAGGGGCCAGGTACGTCTGGTCCATGGAAGTGGAGCAACAGGCCTACAGCTTGTGCAGTCATATTCAGACTCTGATGAGGACAGTGATGGGGCTTGGGATGGGAGGTTAGGTCATCGATATGACCCTCCAGTGGATGCTCAACCAGACACACAGGAGGTGGATCGCAGCGAGATCCACACTCAGATCCTACTGGCTACTGCTTCCTCTGGCTTAAAGGGCAGACACAGTTTCACACATATGCTGGCTGAGCGGGAACAGGGGCGATGTCGTGGGTCAAGTTTCTCTCATGGAGAGTGCAGCCGTATTCGTTCACATTTTTTGCCCAATcatgtggtttacaaggacacttATCAGCAGAAAGTATTTTGTGGAGTCTACAGTGATGAGGGAAATATGTTCCTGTCTGCATGCCAAGACCAGAATATCAGGTTATATGACACTAGTAGGGGTCGTTTTACTCTGAAGAAGACTGTGAAGGCCAGAGACGTGGGTTGGAGTATTCTGGATGTTTGTTTTACACCTGATGCACGATGTGTGCTGTATTCCAGTTGGTCAGACTACATCCACGTGTGCAGTGTAGATGGGGACAATGAAACGCACACCGCTCTGGACCTCAA
>TCONS_00046173
aaaactctgAGAAAGTAAGGAGACACACTTACTCGAGCAGCTAACAGCGTCGGTGTGTCACGTGAGCAGGCGAGTCTCGAGACCGTAAACAACATGGCGCGTCACGAACCAGGAGAGTCTTAAAAACAACTCAGGGAAGCAGCGGCGCTAAGCTTATTGAACGTACAGACAATCAGTCTATGGGCTCTCAGTCCAGTTCTGGGATGTCCGGTCGGGGCTCTGGCAACAACCCAGACCAGTCAGAACCAGAAGCCAACCAGAACGCCAATCAGACGGGTCGTACACAGGCTGAGAGACAGTCAGGATCTGAAGAGGACGTTGACTTAGCACAAGTTCTGGCGTACTTACTGCGAAGGGGCCAGGTACGTCTGGTCCATGGAAGTGGAGCAACAGGCCTACAGCTTGTGCAGTCATATTCAGACTCTGATGAGGACAGTGATGGGGCTTGGGATGGGAGGTTAGGTCATCGATATGACCCTCCAGTGGATGCTCAACCAGACACACAGGAGGTGGATCGCAGCGAGATCCACACTCAGATCCTACTGGCTACTGCTTCCTCTGGCTTAAAGGGCAGACACAGTTTCACACATATGCTGGCTGAGCGGGAACAGGGGCGATGTCGTGGGTCAAGTTTCTCTCATGGAGAGTGCAGCCGTATTCGTTCACATTTTTTGCCCAATcatgtggtttacaaggacacttATCAGCAGAAAGTATTTTGTGGAGTCTACAGTGATGAGGGAAATATGTTCCTGTCTGCATGCCAAGACCAGAATATCAGGTTATATGACACTAGTAGGGGTCGTTTTACTCTGAAGAAGACTGTGAAGGCCAGAGACGTGGGTTGGAGTATTCTGGATGTTTGTTTT
>TCONS_00046174
CGCGTCACGAACCAGGAGAGTCTTAAAAACAACTCAGGGAAGCAGCGGCGCTAAGCTTATTGAACGTACAGGTATATAAACTTAGTTTTTGCAAAcactattttctgtttttttaacgAGGTCTGCAGGAACAAACCAACGGGTAAAAGAGCTGTCAAAGCGCTGTTACCATTTAACTGTCCAGTTCTGGGATGTCCGGTCGGGGCTCTGGCAACAACCCAGACCAGTCAGAACCAGAAGCCAACCAGAACGCCAATCAGACGGGTCGTACACAGGCTGAGAGACAGTCAGGATCTGAAGAGGACGTTGACTTAGCACAAGTTCTGGCGTACTTACTGCGAAGGGGCCAGGTACGTCTGGTCCATGGAAGTGGAGCAACAGGCCTACAGCTTGTGCAGTCATATTCAGACTCTGATGAGGACAGTGATGGGGCTTGGGATGGGAGGTTAGGTCATCGATATGACCCTCCAGTGGATGCTCAACCAGACACACAGGAGGTGGATCGCAGCGAGATCCACACTCAGATCCTACTGGCTACTGCTTCCTCTGGCTTAAAGGGCAGACACAGTTTCACACATATGCTGGCTGAGCGGGAACAGGGGCGATGTCGTGGGTCAAGTTTCTCTCATGGAGAGTGCAGCCGTATTCGTTCACATTTTTTGCCCAATcatgtggtttacaaggacacttATCAGCAGAAAGTATTTTGTGGAGTCTACAGTGATGAGGGAAATATGTTCCTGTCTGCATGCCAAGACCAGAATATCAGGTTATATGACACTAGTAGGGGTCGTTTTACTCTGAAGAAGACTGTGAAGGCCAGAGACGTGGGTTGGAGTATTCTG

Function

symbol description
dcaf11 Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be part of Cul4-RING E3 ubiquitin ligase complex. Orthologous to human DCAF11 (DDB1 and CUL4 associated factor 11).

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0080008 Cul4-RING E3 ubiquitin ligase complex cellular_component

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-050809-116 Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be part of Cul4-RING E3 ubiquitin ligase complex. Orthologous to human DCAF11 (DDB1 and CUL4 associated factor 11).

Ensembl:

ensembl_id ENSDARG00000009868

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046170 False 2052 mRNA 0.48 15 12963119 12981462
TCONS_00046172 False 843 mRNA 0.51 8 12974988 12981423
TCONS_00046173 False 869 mRNA 0.51 8 12975186 12983829
TCONS_00046174 True 845 mRNA 0.49 7 12975198 12981430

Neighbor

gene id symbol gene type direction distance location
XLOC_023345 CR405710.1 coding downstream 4451 12954489 ~ 12958668 (-)
XLOC_023344 pck2 coding downstream 24197 12920019 ~ 12938922 (-)
XLOC_023343 ipo4 coding downstream 130620 12754013 ~ 12832499 (-)
XLOC_023342 cox19 coding downstream 214003 12747377 ~ 12749116 (-)
XLOC_023341 NA coding downstream 216620 12741936 ~ 12746499 (-)
XLOC_023348 NA coding upstream 74838 13058667 ~ 13125473 (-)
XLOC_023349 NA coding upstream 240419 13224248 ~ 13245885 (-)
XLOC_023350 rdh10a coding upstream 267651 13251480 ~ 13272843 (-)
XLOC_023351 terf1 coding upstream 352498 13336327 ~ 13349802 (-)
XLOC_023352 NA coding upstream 371449 13355278 ~ 13357652 (-)
XLOC_023665 dre-mir-735 misc upstream 25194132 38177961 ~ 38178027 (-)
XLOC_023339 NA non-coding downstream 361390 12596538 ~ 12601729 (-)
XLOC_023338 CR855257.1 non-coding downstream 806475 12155107 ~ 12156644 (-)
XLOC_023337 CU929203.2 non-coding downstream 833663 12128505 ~ 12129456 (-)
XLOC_023335 NA non-coding downstream 1087907 11874337 ~ 11875212 (-)
XLOC_023354 CR450741.1 non-coding upstream 625769 13609598 ~ 13609714 (-)
XLOC_023356 NA non-coding upstream 1458125 14441954 ~ 14445136 (-)

Expression


Co-expression Network