XLOC_023350 (rdh10a)


Basic Information

Item Value
gene id XLOC_023350
gene name rdh10a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 13251480 ~ 13272843 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046175
GACATTTTGAGACCTTTTTCTAAAACGAGTCACGGCACGGCATTAAACATGGTGATGAACATCTTCGTGGAGTTTTTCTTGGTCATGCTCAAAGTTTGCTGGGCCATCGTGATGGCCGGATTCAAGTGGCTGATACGGCCGAAGGAGAAGAGCGTAGCGGGACAGGTGTGCGTGATCACCGGGGCGGGCGGAGGGCTCGGGCGGCTCTTCGCCAAGGAGTTCGCCCGGCGCCGGGCTACACTGGTGCTGTGGGACATCAACAGCCACAGCAATGAGGAGACTGCGGAGATGGTGCGACAGATCTACAGAGAGCAGGACAACCCGATGTCAAAAGAGGGAGCTGTTGGTGGTGTGGAAGAGGTTCCTCCGTTTCAGCCGCAGGTGTATACATACGTGCTTGATGTGGGAAAGAGGGAGAGTGTGTACTCGACAGCAGAGAAAGTGCGTAAGGAGGTTGGTGAAGTGGACTTGTTGATCAACAACGCTGGTGTTGTGTCCGGCCACCATCTGCTAGAGTGTCCCGATGAGCTGATCGAGAGGACCATGGTGGTGAACTGCCACGCGCACTTCTGGACCACCAAGGCATTTCTTCCCAAGATGCTAGAGATGAACCATGGCCATATTGTGACCGTTGCCAGTTCACTGGGCCTTTTCAGCACAGCTGGTGTGGAGGATTACTGCGCTAGCAAGTTTGGTGCCATCGGCTTCCATGAGTCCCTGAGCCACGAAATCCAGGCTTCGGAGAAGGACGGTATCAAGATGACGCTGGTGTGTCCTTACCTGGTGGACACGGGCATGTTCAGAGGATGCAGAATAAGGAAAGAGATCGAGCCGTTTCTCCCTCCGCTGAGACCAGAGTTCTGTGTGAAACAGGCTATGAGGGCCATCCTGACAGACCAGCCCATGATCTGCACGCCTCGCATCGTATACATGGTCAACTTTATGAAAAGCATTTTGCCGTTTGAAGCAATCGTGTGCATGTACCGGTTCCTTGGTGCTGACAAGTGTATGTACCCCTTCCTGGCTCAAAGAAAAGAGGCGATGAACAACAACGAGGCCAAGAACGGGATCTAGAGGGTGCCATTTTTTTAACCCACAAGGGTATTTTTCTAACCCGCATGAGGATAAGACCACTGAGAGGGCAGAAGGAAGAGAAAAGACTGAGTTTTTTTAGACTGGTGCACTTGCATTTGGCAGATGCAAAGGTTTACCATATTGTTCCTCTGGAACAAAGAAAGCTGTGTACTACACTAaggatttatttgttgatttttatgTTGTGTGTCTTTTTTAAAGGTTTGTTTAATCAAACCATCCATCTATATACTGTGTCAATAGTTTTGAAATCATACATGAGCTATTCAGTAATTAACTATTTACGTAATGTAGTCATCAGCATTATCTAGCATCTTTGTGAAActatacagtatgttactgtacaaACAGTAAATTCTTGTcactttttttggttttgttttgtttgtgtgtagacATGCACTGTATTTACTTTCTTCTACACTGCCGACATTATCTACACAGTTCAATGTGGCACAACGCCAACCCCAATCCATTTAAAGGCTGGAGATCATGTGTCTGAAAGAGCCCAGTTCTGCACCATGTGATGTTATACAGTAGATGAAATATTTTGCATTATCccccccacacacaaacacacatttctcTTTGTTGACGTCATGAGAAGTGTAAGTGGGTAAACCTCTGGTCTTTTATTTTTTCAGCTGCCGATGGGAAgggagtgtttattttttttactccatAATCTACAGAGTCTTACGGTATTTTGTATAAGTAAATATACCAGAGCGACGGTCAATCTGAAGAGATGGCCTGCTTTTTATCTAATGTCATTGATTATTATATTTAGTATTAAGTGACCAATTTTAAACTTGCGCAGCAGCTGAAAATACTTTTGGTCGTTTCATTGTGGAATCATCATGAAGTTTATAAATCATTTATGAATCGCCAGTTACAGTCAATAACCCGAGGATCTTGTCATAATCTGaatatgatgcatttttttttaatgtacacttATTATTTCTGTATGCAAAGCTGAACCATTAAACAAGTTTTTCACACACAATTTTTACATTTAGGCCAGCAAAAGACAAAACACATGATTTTAAAGTACATTCCAATAGGCTTCCTCTCTTCACCGACTGTGATGAGCCTAAAATCTCTACCTCTTcatattttttttgccatttgttaTTGTTACAGTATGACATAAATACTCTTTTGTAACTTTCCTAAAGAGTGCTCTATAGATGAGCACACAACATGGTTCCAATGTTTAGTGTCTCTACCtaacttaaattaataaaatgatttagATTATGA
>TCONS_00046176
GTGTTTtctccttcctttctttctcctGGGCGGGTCAGGAAAGAGATCGAGCCGTTTCTCCCTCCGCTGAGACCAGAGTTCTGTGTGAAACAGGCTATGAGGGCCATCCTGACAGACCAGCCCATGATCTGCACGCCTCGCATCGTATACATGGTCAACTTTATGAAAAGCATTTTGCCGTTTGAAGCAATCGTGTGCATGTACCGGTTCCTTGGTGCTGACAAGTGTATGTACCCCTTCCTGGCTCAAAGAAAAGAGGCGATGAACAACAACGAGGCCAAGAACGGGATCTAGAGGGTGCCATTTTTTTAACCCACAAGGGTATTTTTCTAACCCGCATGAGGATAAGACCACTGAGAGGGCAGAAGGAAGAGAAAAGACTGAGTTTTTTTAGACTGGTGCACTTGCATTTGGCAGATGCAAAGGTTTACCATATTGTTCCTCTGGAACAAAGAAAGCTGTGTACTACACTAaggatttatttgttgatttttatgTTGTGTGTCTTTTTTAAAGGTTTGTTTAATCAAACCATCCATCTATATACTGTGTCAATAGTTTTGAAATCATACATGAGCTATTCAGTAATTAACTATTTACGTAATGTAGTCATCAGCATTATCTAGCATCTTTGTGAAActatacagtatgttactgtacaaACAGTAAATTCTTGTcactttttttggttttgttttgtttgtgtgtagacATGCACTGTATTTACTTTCTTCTACACTGCCGACATT
>TCONS_00046177
ACATTTTGAGACCTTTTTCTAAAACGAGTCACGGCACGGCATTAAACATGGTGATGAACATCTTCGTGGAGTTTTTCTTGGTCATGCTCAAAGTTTGCTGGGCCATCGTGATGGCCGGATTCAAGTGGCTGATACGGCCGAAGGAGAAGAGCGTAGCGGGACAGGTGTATACATACGTGCTTGATGTGGGAAAGAGGGAGAGTGTGTACTCGACAGCAGAGAAAGTGCGTAAGGAGGTTGGTGAAGTGGACTTGTTGATCAACAACGCTGGTGTTGTGTCCGGCCACCATCTGCTAGAGTGTCCCGATGAGCTGATCGAGAGGACCATGGTGGTGAACTGCCACGCGCACTTCTGGACCACCAAGGCATTTCTTCCCAAGATGCTAGAGATGAACCATGGCCATATTGTGACCGTTGCCAGTTCACTGGGCCTTTTCAGCACAGCTGGTGTGGAGGATTACTGCGCTAGCAAGTTTGGTGCCATCGGCTTCCATGAGTCCCTGAGCCACGAAATCCAG

Function

symbol description
rdh10a Predicted to enable oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor. Acts upstream of or within retinoic acid biosynthetic process. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in lipid droplet. Is expressed in several structures, including margin; mesoderm; nervous system; optic fissure; and optic vesicle. Orthologous to human RDH10 (retinol dehydrogenase 10).

GO:

id name namespace
GO:0042572 retinol metabolic process biological_process
GO:0002138 retinoic acid biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0005811 lipid droplet cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0052650 NADP-retinol dehydrogenase activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070112-2242 Predicted to enable oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor. Acts upstream of or within retinoic acid biosynthetic process. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in lipid droplet. Is expressed in several structures, including margin; mesoderm; nervous system; optic fissure; and optic vesicle. Orthologous to human RDH10 (retinol dehydrogenase 10).

Ensembl:

ensembl_id ENSDARG00000058730

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046175 False 2361 mRNA 0.43 6 13251480 13272843
TCONS_00046176 False 749 lncRNA 0.41 2 13252312 13255032
TCONS_00046177 True 518 mRNA 0.52 4 13255409 13272842

Neighbor

gene id symbol gene type direction distance location
XLOC_023349 NA coding downstream 5595 13224248 ~ 13245885 (-)
XLOC_023348 NA coding downstream 126007 13058667 ~ 13125473 (-)
XLOC_023347 CR405710.2 coding downstream 248487 12970119 ~ 13002993 (-)
XLOC_023346 dcaf11 coding downstream 267651 12963119 ~ 12983829 (-)
XLOC_023345 CR405710.1 coding downstream 292812 12954489 ~ 12958668 (-)
XLOC_023351 terf1 coding upstream 63484 13336327 ~ 13349802 (-)
XLOC_023352 NA coding upstream 82435 13355278 ~ 13357652 (-)
XLOC_023353 KCNB2 coding upstream 89003 13361846 ~ 13566015 (-)
XLOC_023354 CR450741.1 coding upstream 336755 13609598 ~ 13609714 (-)
XLOC_023355 xkr9 coding upstream 929484 14202327 ~ 14212521 (-)
XLOC_023665 dre-mir-735 misc upstream 24905118 38177961 ~ 38178027 (-)
XLOC_023341 NA non-coding downstream 504981 12741936 ~ 12746499 (-)
XLOC_023339 NA non-coding downstream 649751 12596538 ~ 12601729 (-)
XLOC_023338 CR855257.1 non-coding downstream 1094836 12155107 ~ 12156644 (-)
XLOC_023356 NA non-coding upstream 1169111 14441954 ~ 14445136 (-)
XLOC_023357 BX294113.2 non-coding upstream 1260999 14533842 ~ 14536411 (-)
XLOC_023360 NA non-coding upstream 1732669 15005512 ~ 15032354 (-)

Expression


Co-expression Network