XLOC_023351 (terf1)


Basic Information

Item Value
gene id XLOC_023351
gene name terf1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 13336327 ~ 13349802 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046178
taaaacaaaccacAGCACAAAATCCAACATACTTTGCTAACGTGATAAGCTAAGTTACTTACAAAGGTGAGTGCTACTTTTCACACCAAATGAAGTTGTTTTTTCTCATGTTGGACGTTAGTAGGACAGTAGGACTACTCGGAGAAAATATTGAAATTAAGTATAAAATTCACCTTAGTGTTAACCTTACAGGTACTGCACAATAATGTGCTAATTTTATCAAGCAAGCAACGTTACTTTCTGTGCGATAGGAGTTGTGTCCTCCGCGCCAATAGATGGCGCTGTGCCCACGgtttataataaacaaacagatggcgGGAACGTTCGGTTGTGGTTTCATAATCATAAACCTGAAGATGGAGTCGGAGTCACATGAGATTACGAGTACTAGTGATAAAACAACTTCACAAGAAGTTAATAACGTTGTTCAGTCATGGATTATTGACTATTATTTTGCAACATTATGTCGGCTTTTTAGAGAAAGGTCTTCGGTGGAGTTTCGAAAAGAACTGAAGTTATTTGAAGGTAACGTAATGAGTTTACATGCTAACCTGTTTTGATGTGAAGTTAAACATCAAGCGGTAACTTTGCTTACATTTTGACTTCCGCTTGGTGTAACACCcttgtaatgttttgttttttattttgatgtgttTAGGTTTAGTGGATGAGCTCGAATCACATTCCTCTCAGAGAACCGTCTGTTGCTTCCTAGCCAGAGTGATGGACGGGGAAAACCTGGATGTCCGTTATGATCACGTTGCTCGAATCACCCCCTTGATGTCAGCTGTCCCAGTTTGGGAGTCATTAAAGGACTTTTCTGATCCTACTTTACATGGAAAGATTCAGACGCTACTGATGGTTCAGagtgtctctgtgtgtgtcaaGAAAGGATATGACAAATTGGCCAAAGAAACCTTGCAGTGGCTGGAAGAACAGACAGATGTACCAGAGAAGCTACAACGAAAGCTTGCCACCATTGTGAACAAGAAGGATGCATATGATCAGATCCTGATGAACTTCAGTTTTGATAAGCTAATGGAGACCATCGACACATTCCTTGAAGCTTTCAACCAGCAATATGCCTCCGTTTTCTTACTCGAAgcaGCATCAAAAGTTGTTCAAGCTCGTCATGAGAGATCTGAACTGGAGGAAACTGAAGAGACACCACCCAGCCTACAGTCAGACAAATCAGAATCAGAAAATGAGGAACATGAGGATCCACTTGTGGTAAATATCAGACCCAAAAGAAGACTTCTTCCAAAACAAAATGATCCATGGAAGCCAGAAACTGCAAAGAAAGCTCACGCCACACTCAAGAGAACCTCTATTTGCAAGGTTTCCAGGAGAAGTAATACCCCTTCCGAATTACACAGCAATATTACTGTGTCACGCCATTCCAGGAAGaaatGGACTGATGTAGAAGACAAGAAGCTGAAAGCAGGTGTGAAGAAACATGGGGTTGGCAAATGGAGCAAAATCCTTAATGACTTTGATTTTGACAATCGCACCACTGTTAATTTGAAAGACAGATGGAGAGTCCTAAAGAAACAGAATCTTGTCTCTTGAGCTACAGCTGCCTTctgcttttaatatttaaagacaTTTCTTGTATTTCAGTTCTCAGCTGTGCATAGTGcttgtgcaatatatatttatattttaatggtagatgttttttatttctttaaaccaatttactttatttagtttACAACATAACCAACATTTTTTTACGATGTCACAGAATTTCAGCAGTTATACATGTCATTTCACACAGCAAGTAAAAAATGTTAGTATTTTTTCTGAATTGATTAAAAGCTTTCAGCATTATGTTGCCATTTATTTAAACTGTAAGACCAACATTTGTCCAGTAGAGGATGCAGATGAGTCTAGAGTAAgctttgttttgtatttgaattcTGTTCATCTTTCACAGGAAAAAAACGTTTTTGAAATGATGCAGCTGTAAAAGTgaaagtgttgtaaataaatgtgtatacatTTGAAATGATTTGCATCTAATAGTACATTTAGTTGATTTGTGGGTTTTACCAAGGGCTCTGGaagaatgtttttaaatgaagatgAAGCTGTGCACTTGTGGACAGGAGCAGTGCTGTAGTCTCTGTACTTTCCTCCATGTTCCTCTGCAAGGAGGGTTTCCCACCGCCTGCCAGTGAAGAAGATCATTCCTGCGCACAGAAGAAGACACTCACTTTATCCACATGCTTGTTTCTTTATTGTTCTTCATAGcatcttaaagggatatttcaccccaaaaatgaatattaagTTACCGTTTACTGACCCTCCACTTGTTTTaaacatatttgagtttcttctgatgaacagaaAAGATCATATTTTGGAATAAATCGATAAAAACTGGGTACCATTATCTTTCATAGGTAATGAAAGTTATATAATGGTTtctaacattgttcaaaatatcttcttttgtgttcagtaggGAAAAACTCATAAAAGCTTGGAACCGCATCAAGGaaagtaaaaattaaatgttttggtgaactatccctttaagtatttaaattgcTAAACTGTAaagatgtatgtatatatatatatatatatatatatatatatatatatatatatatgtatgtatgtgggtgcgtgtatgtatgtatgtatatatatatatatatatatatgtatgtgggtgcgtgtatgtatgtatgtatgtatgtatgtatatatatatatatatatatatatatatatatatatatatatatatatacatacacacacacacacacacacatatatatatatgtgggtgtgtgtatgtatgtatatgtgtgtgtatatatatatatatatatatatatatatacatacacacacacacacacacacacacatagggaaAA
>TCONS_00046179
ATAATCATAAACCTGAAGATGGAGTCGGAGTCACATGAGATTACGAGTACTAGTGATAAAACAACTTCACAAGAAGTTAATAACGTTGTTCAGTCATGGATTATTGACTATTATTTTGCAACATTATGTCGGCTTTTTAGAGAAAGGTCTTCGGTGGAGTTTCGAAAAGAACTGAAGTTATTTGAAGGTTTAGTGGATGAGCTCGAATCACATTCCTCTCAGAGAACCGTCTGTTGCTTCCTAGCCAGAGTGATGGACGGGGAAAACCTGGATGTCCGTTATGATCACGTTGCTCGAATCACCCCCTTGATGTCAGCTGTCCCAGTTTGGGAGTCATTAAAGGACTTTTCTGATCCTACTTTACATGGAAAGATTCAGACGCTACTGATGGTTCAGagtgtctctgtgtgtgtcaaGAAAGGATATGACAAATTGGCCAAAGAAACCTTGCAGTGGCTGGAAGAACAGACAGATGTACCAGAGAAGCTACAACGAAAGCTTGCCACCATTGTGAACAAGAAGGATGCATATGATCAGATCCTGATGAACTTCAGTTTTGATAAGCTAATGGAGACCATCGACACATTCCTTGAAGCTTTCAACCAGCAATATGCCTCCGTTTTCTTACTCGAAgcaGCATCAAAAGTTGTTCAAGCTCGTCATGAGAGATCTGAACTGGAGGAAACTGAAGAGACACCACCCAGCCTACAGTCAGACAAATCAGAATCAGAAAATGAGGAACATGAGGATCCACTTGTGGTAAATATCAGACCCAAAAGAAGACTTCTTCCAAAACAAAATGATCCATGGAAGCCAGAAACTGCAAAGAAAGCTCACGCCACACTCAAGAGAACCTCTATTTGCAAGGTTTCCAGGAGAAGTAATACCCCTTCCGAATTACACAGCAATATTACTGTGTCACGCCATTCCAGGAAGaaatGGACTGATGTAGAAGACAAGAAGCTGAAAGCAGGTGTGAAGAAACATGGGGTTGGCAAATGGAGCAAAATCCTTAATGACTTTGATTTTGACAATCGCACCACTGTTAATTTGAAAGACAGATGGAGAGTCCTAAAGAAACAGAATCTTGTCTCTTGAGCTACAGCTGCCTTctgcttttaatatttaaagacaTTTCTTGTATTTCAGTTCTCAGCTGTGCATAGTGcttgtgcaatatatatttatattttaatggtagatgttttttatttctttaaaccaatttactttatttagtttACAACATAACCAACATTTTTTTACGATGTCACAGAATTTCAGCAGTTATACATGTCATTTCACACAGCAAGTAAAAAATGTTAGTATTTTTTCTGAATTGATTAAAAGCTTTCAGCATTATGTTGCCATTTATTTAAACTGTAAGACCAACATTTGTCCAGTAGAGGATGCAGATGAGTCTAGAGTAAgctttgttttgtatttgaattcTGTTCATCTTTCACAGGAAAAAAACGTTTTTGAAATGATGCAGCTGTAAAAGTgaaagtgttgtaaataaatgtgtatacatTTGAAATGA
>TCONS_00046180
GTGGTTTCATAATCATAAACCTGAAGATGGAGTCGGAGTCACATGAGATTACGAGTACTAGTGATAAAACAACTTCACAAGAAGTTAATAACGTTGTTCAGTCATGGATTATTGACTATTATTTTGCAACATTATGTCGGCTTTTTAGAGAAAGGTCTTCGGTGGAGTTTCGAAAAGAACTGAAGTTATTTGAAGGTTTAGTGGATGAGCTCGAATCACATTCCTCTCAGAGAACCGTCTGTTGCTTCCTAGCCAGAGTGATGGACGGGGAAAACCTGGATGTCCGTTATGATCACGTTGCTCGAATCACCCCCTTGATGTCAGCTGTCCCAGTTTGGGAGTCATTAAAGGACTTTTCTGATCCTACTTTACATGGAAAGATTCAGACGCTACTGATGGTTCAGAAAGGATATGACAAATTGGCCAAAGAAACCTTGCAGTGGCTGGAAGAACAGACAGATGTACCAGAGAAGCTACAACGAAAGCTTGCCACCATTGTGAACAAGAAGGATGCATATGATCAGATCCTGATGAACTTCAGTTTTGATAAGCTAATGGAGACCATCGACACATTCCTTGAAGCTTTCAACCAGCAATATGCCTCCGTTTTCTTACTCGAAgcaGCATCAAAAGTTGTTCAAGCTCGTCATGAGAGATCTGAACTGGAGGAAACTGAAGAGACACCACCCAGCCTACAGTCAGACAAATCAGAATCAGAAAATGAGGAACATGAGGATCCACTTGTGGTAAATATCAGACCCAAAAGAAGACTTCTTCCAAAACAAAATGATCCATGGAAGCCAGAAACTGCAAAGAAAGCTCACGCCACACTCAAGAGAACCTCTATTTGCAAGGTTTCCAGGAGAAGTAATACCCCTTCCGAATTACACAGCAATATTACTGTGTCAC
>TCONS_00046181
CACGTTGCTCGAATCACCCCCTTGATGTCAGCTGTCCCAGTTTGGGAGTCATTAAAGGACTTTTCTGATCCTACTTTACATGGAAAGATTCAGACGCTACTGATGGTTCAGGTATTTGTTTGAGAGTGATGGATGATTCACTTGTGTAGAATTTAAATGAGGTAAAGTCAAGAAACTGCTTTCCTTGTATGTCCAagagtgtctctgtgtgtgtcaaGAAAGGATATGACAAATTGGCCAAAGAAACCTTGCAGTGGCTGGAAGAACAGACAGATGTACCAGAGAAGCTACAACGAAAGCTTGCCACCATTGTGAACAAGAAGGATGCATATGATCAGATCCTGATGAACTTCAGTTTTGATAAGCTAATGGAGACCATCGACACATTCCTTGAAGCTTTCAACCAGCAATATGCCTCCGTTTTCTTACTCGAAgcaGCATCAAAAGTTGTTCAAGCTCGTCATGAGAGATCTGAACTGGAGGAAACTGAAGAGACACCACCCAGCCTACAGTCAGACAAATCAGAATCAGAAAATGAGGAACATGAGGATCCACTTGTGGTAAATATCAGACCCAAAAGAAGACTTCTTCCAAAACAAAATGATCCATGGAAGCCAGAAACTGCAAAGAAAGCTCACGCCACACTCAAGAGAACCTCTATTTGCAG

Function

symbol description
terf1 Enables telomeric DNA binding activity. Predicted to be involved in negative regulation of cellular metabolic process and telomere maintenance via telomerase. Predicted to act upstream of or within telomere maintenance. Predicted to be located in nucleus. Predicted to be part of nuclear telomere cap complex. Is expressed in several structures, including gill; heart; liver; pleuroperitoneal region; and post-vent region. Orthologous to human TERF1 (telomeric repeat binding factor 1).

GO:

id name namespace
GO:1905778 negative regulation of exonuclease activity biological_process
GO:0008156 negative regulation of DNA replication biological_process
GO:1905839 negative regulation of telomeric D-loop disassembly biological_process
GO:0007004 telomere maintenance via telomerase biological_process
GO:0000723 telomere maintenance biological_process
GO:0000783 nuclear telomere cap complex cellular_component
GO:0005634 nucleus cellular_component
GO:0071532 ankyrin repeat binding molecular_function
GO:0042162 telomeric DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0042803 protein homodimerization activity molecular_function
GO:0003691 double-stranded telomeric DNA binding molecular_function
GO:0003720 telomerase activity molecular_function
GO:0008301 DNA binding, bending molecular_function
GO:0008017 microtubule binding molecular_function
GO:0098505 G-rich strand telomeric DNA binding molecular_function

KEGG:

id description
ko03032 DNA replication proteins

ZFIN:

id description
ZDB-GENE-090612-2 Enables telomeric DNA binding activity. Predicted to be involved in negative regulation of cellular metabolic process and telomere maintenance via telomerase. Predicted to act upstream of or within telomere maintenance. Predicted to be located in nucleus. Predicted to be part of nuclear telomere cap complex. Is expressed in several structures, including gill; heart; liver; pleuroperitoneal region; and post-vent region. Orthologous to human TERF1 (telomeric repeat binding factor 1).

Ensembl:

ensembl_id ENSDARG00000058710

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046178 False 2900 mRNA 0.36 9 13336327 13349802
TCONS_00046179 False 1543 mRNA 0.38 10 13337213 13349464
TCONS_00046180 False 909 mRNA 0.42 9 13338123 13349472
TCONS_00046181 True 667 lncRNA 0.42 5 13341064 13347517

Neighbor

gene id symbol gene type direction distance location
XLOC_023350 rdh10a coding downstream 63484 13251480 ~ 13272843 (-)
XLOC_023349 NA coding downstream 90442 13224248 ~ 13245885 (-)
XLOC_023348 NA coding downstream 210854 13058667 ~ 13125473 (-)
XLOC_023347 CR405710.2 coding downstream 333334 12970119 ~ 13002993 (-)
XLOC_023346 dcaf11 coding downstream 352498 12963119 ~ 12983829 (-)
XLOC_023352 NA coding upstream 5476 13355278 ~ 13357652 (-)
XLOC_023353 KCNB2 coding upstream 12044 13361846 ~ 13566015 (-)
XLOC_023354 CR450741.1 coding upstream 259796 13609598 ~ 13609714 (-)
XLOC_023355 xkr9 coding upstream 852525 14202327 ~ 14212521 (-)
XLOC_023356 NA coding upstream 1092152 14441954 ~ 14445136 (-)
XLOC_023665 dre-mir-735 misc upstream 24828159 38177961 ~ 38178027 (-)
XLOC_023341 NA non-coding downstream 589828 12741936 ~ 12746499 (-)
XLOC_023339 NA non-coding downstream 734598 12596538 ~ 12601729 (-)
XLOC_023338 CR855257.1 non-coding downstream 1179683 12155107 ~ 12156644 (-)
XLOC_023357 BX294113.2 non-coding upstream 1184040 14533842 ~ 14536411 (-)
XLOC_023360 NA non-coding upstream 1655710 15005512 ~ 15032354 (-)

Expression


Co-expression Network