XLOC_023355 (xkr9)


Basic Information

Item Value
gene id XLOC_023355
gene name xkr9
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 14202327 ~ 14212521 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046185
AAAAAACAGAAGAATGGGAAACCTGGTGACCAGTTTTACCAGGTTATCAAAAACATGAAGAGAATGAATGAAGCAGCTTTTTCTATCAACAGGAAGCAAACATCTGTTTACATTTTCAGCCTTATCAAGCACCATTCTCCATCAGCGTTTTTCAAATGCCATAAATCACAACCATGGCAGCTTTTAGAGATGGATTTCGGTGGCTATGCACCCTTTTtggattcattttttatttaggaGACATTGGTTCCGACATTTTGTTGTCTGTGCAGTATTTTAGACGTGGACATGTCACATGGGCTGCACTGACTCTTACGTTTGTTCTGGTCGCATCTGTGACCGTACAGACATTCAGCTATGCGTGGTTCAAAGACGACAACAAGGAGAGTCAAACAAATGTCAAGTGTATTCCCACTTGCTATCTGATCGGGATACATTTACTGCAGATAGGCATTTGTTCAAGGTATCTCCGATTCCTAAAGAGGAAATTCAAAGCCCTTTGTTCAAATCAGACAAGAGAGGAAAAGGACTATGACTCTGGGCTGGCTGCAGATCTCAGCATGCTCCGTATGTTTGAGACGTTTCTGGAGAGTGTTCCTCAACTCACTCTGCAGACCTACATCATACTGGAGCACAACCATCGCTCCAATCTGCAATACATCAGCATGGCCATGTCTTTCGTCACTATAGCCTGGTCAACGGTGGATTATCGACGCTGTTTACGGTCCTCTTTAAGGGATACAAATGAAATGCCATCTGGAAGCCCAACAGCCATTTACCTGTTCTACAAAATCTTCACCATCACTCCTCGAATCCTCAGCCTGACGCTCTTCCTCATACTTTCCTACTTCACCATTCCAGCAATAGCGCTTGTATGGCTGGTGGGAACCACCTGGGCATTTGTGGAGAAGACGAATTTCTGTACTTCACGAGTCCTTGAATGGATCTATCGAGCCGTAGTTGGAGTTAttctcatttttacattttttaacattagGGGACAGAACACTaaagtccccatgactgtttatTACATATTCAGCGTAACTGAAAATCTTTCTGCGCCCATATTGTTGGCTCTGCTCAAACCGGAGTCTGAAGGGACTGACTATTTCCTGCccataatactttttattttattttctaattcaATAGGGCTGATTTTTCTGGCGGTTTATTACAGCCGTCTTCATCATCATGTGCATCCCCCTGTCCCTCCGTCTGAAAGGATAGCAGATGAAGTGGATGGAGGTCCTCAAGTTAAGAATGTACAAAAAATGACacgttttaatcattttttacaaatataattatCTTGCTCAAAAAAATTGAATTGACTTACTAAATGTCAGTAGCACTTAATTTAACAATACAGTTTTGCATACTATTAACATTACACGTCATTACATAAACTGGATAATAAACTCACAACTCCTAAA
>TCONS_00046186
AAAACATGAAGAGAATGAATGAAGCAGCTTTTTCTATCAACAGGAAGCAAACATCTGTTTACATTTTCAGCCTTATCAAGCACCATTCTCCATCAGCGTTTTTCAAATGCCATAAATCACAACCATGGCAGCTTTTAGAGATGGATTTCGGTGGCTATGCACCCTTTTtggattcattttttatttaggaGACATTGGTTCCGACATTTTGTTGTCTGTGCAGTATTTTAGACGTGGACATGTCACATGGGCTGCACTGACTCTTACGTTTGTTCTGGTCGCATCTGTGACCGTACAGACATTCAGCTATGCGTGGTTCAAAGACGACAACAAGGAGAGTCAAACAAATGTCAAGTGTATTCCCACTTGCTATCTGATCGGGATACATTTACTGCAGATAGGCATTTGTTCAAGGTATCTCCGATTCCTAAAGAGGAAATTCAAAGCCCTTTGTTCAAATCAGACAAGAGAGGAAAAGGACTATGACTCTGGGCTGGCTGCAGATCTCAGCATGCTCCGTATGTTTGAGACGTTTCTGGAGAGTGTTCCTCAACTCACTCTGCAGACCTACATCATACTGGAGCACAACCATCGCTCCAATCTGCAATACATCAGCATGGCCATGTCTTTCGTCACTATAGCCTGGTCAACGGTGGATTATCGACGCTGTTTACGGTCCTCTTTAAGGGATACAAATGAAATGCCATCTGGAAGCCCAACAGCCATTTACCTGTTCTACAAAATCTTCACCATCACTCCTCGAATCCTCAGCCTGACGCTCTTCCTCATACTTTCCTACTTCACCATTCCAGCAATAGCGCTTGTATGGCTGGTGGGAACCACCTGGGCATTTGTGGAGAAGACGAATTTCTGTACTTCACGAGTCCTTGAATGGATCTATCGAGCCGTAGTTGGAGTTAttctcatttttacattttttaacattagGGGACAGAACACTaaagtccccatgactgtttatTACATATTCAGCGTAACTGAAAATCTTTCTGCGCCCATATTGTTGGCTCTGCTCAAACCGGAGTCTGAAGGGACTGACTATTTCCTGCccataatactttttattttattttctaattcaATAGGGCTGATTTTTCTGGCGGTTTATTACAGCCGTCTTCATCATCATGTGCATCCCCCTGTCCCTCCGTCTGAAAGGATAGCAGATGAAGTGGATGGAGGTCCTCAAGTTAAGAATGTACAAAAAATGACacgttttaatcattttttacaaatataattatCTTGCTCAAAAAAATTGAATTGACTTACTAAATGTCAGTAGCACTTAATTTAACAATACAGTTTTGCATACTATTAACATTACACGTCATTACATAAACTGGATAATAAACTCACAACTCCT

Function

symbol description
xkr9 Predicted to be involved in apoptotic process involved in development; engulfment of apoptotic cell; and phosphatidylserine exposure on apoptotic cell surface. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human XKR9 (XK related 9).

GO:

id name namespace
GO:0070782 phosphatidylserine exposure on apoptotic cell surface biological_process
GO:0043652 engulfment of apoptotic cell biological_process
GO:1902742 apoptotic process involved in development biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060421-6224 Predicted to be involved in apoptotic process involved in development; engulfment of apoptotic cell; and phosphatidylserine exposure on apoptotic cell surface. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human XKR9 (XK related 9).

Ensembl:

ensembl_id ENSDARG00000026500

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046185 False 1439 mRNA 0.41 4 14202327 14212521
TCONS_00046186 True 1387 mRNA 0.41 3 14202330 14209202

Neighbor

gene id symbol gene type direction distance location
XLOC_023354 CR450741.1 coding downstream 592613 13609598 ~ 13609714 (-)
XLOC_023353 KCNB2 coding downstream 636312 13361846 ~ 13566015 (-)
XLOC_023352 NA coding downstream 844675 13355278 ~ 13357652 (-)
XLOC_023351 terf1 coding downstream 852525 13336327 ~ 13349802 (-)
XLOC_023350 rdh10a coding downstream 929484 13251480 ~ 13272843 (-)
XLOC_023356 NA coding upstream 229433 14441954 ~ 14445136 (-)
XLOC_023357 BX294113.2 coding upstream 321321 14533842 ~ 14536411 (-)
XLOC_023358 pabpn1 coding upstream 346807 14559328 ~ 14577559 (-)
XLOC_023359 jph1a coding upstream 411310 14623831 ~ 14712427 (-)
XLOC_023360 NA coding upstream 792991 15005512 ~ 15032354 (-)
XLOC_023665 dre-mir-735 misc upstream 23965440 38177961 ~ 38178027 (-)
XLOC_023349 NA non-coding downstream 956442 13224248 ~ 13245885 (-)
XLOC_023348 NA non-coding downstream 1076854 13058667 ~ 13125473 (-)
XLOC_023341 NA non-coding downstream 1455828 12741936 ~ 12746499 (-)
XLOC_023362 BX950202.1 non-coding upstream 1001350 15213871 ~ 15213985 (-)
XLOC_023364 NA non-coding upstream 1532549 15745070 ~ 15749414 (-)

Expression


Co-expression Network