XLOC_023359 (jph1a)


Basic Information

Item Value
gene id XLOC_023359
gene name jph1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 14623831 ~ 14712427 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046192
ATCCTATGTTGTGGTCTTCAACCCCCCAATGCAAAGAAATGTTCAAAGTTCAAGATATAAGATTGCCAATTAAGCAACACTAACATtattcattttgtgtgtttttgcagtTTATAGTTTTAATGATTTTACATTACGTTTATCCTTCCCCAATGCATGGAGGCCCTCTAGTGGGGCTCGAGCCCCTGGTTGAGAACATCTGCTTTAGGGTCAGTGTATGTATCGTCATTTtggaaattacaaaaaaaagatttaaaaaacaaattcgaAAATACTCAGAAAACAACATGATATGGGCTAATCATCCCTTAATTTTATTGACATGTCGGTTGTGGACATGGCATGTGTGCAGTGCAATTTGTCAtgttttagttacatttttataaagcatttatttgttatatttttccTCTTGAAATGTGAGTTCTTACCGGTTCTAACCTCTGAACCAGTGCCCCAGCTCTCCGTTATCTCGGCGCGGGTGAAGTGGGCGGGGCGGCGGAGATGACGCGCAGGACTGACAGCATCTCTCGCCGCTGTTCCCGGTCTCGGTGTGTCTGCTCTGCGCAGCGCCTGCGAACGGAGGGAGTCAGAGAAACGCAGCGGCGGTTCCGGGCAGCGCGTGCGGCTTCGGTAATGATGCACTAAACCTGCCTCTTCATTCACACTCTCACTGACAAATACTGAAACCACAACCACCACAACATCATCTCCACTGTGATCCATTCTCTTCGGTTTCATCGTCGCGGCTGAACTCGGAAGATTTAATGAAAGAGAAAGACGAGAAGAAGCGCACGGCAACGTTAcgactgtttttattttcatcCCATTCTGAATGACGGGCGGACGGTTCGACTTCGACGATGGAGGCACTTACTGTGGCGGATGGGAGGACGGGAAAGCCCACGGACACGGCATCTGCACGGGACCCAAGGGTCAGGGCGAGTACTCCGGGTCCTGGTCCCACGGGTTTGAGGTAGTCGGGGTCTACACCTGGCCCAGCGGGAACACGTACCAGGGCTACTGGTCGCAGGGGAAGCGCCACGGGCTGGGTGTTGAGACCAAGGGGAAATGGCTTTATCGCGGGGAGTGGAGTCACGGGTTCAAGGGTCGCTATGGAGTTCGGCAGAGCACCAACACACCTGCTAGATATGATGGGACGTGGAGTAATGGACTGCAGGATGGATATGGAGTCGAAACCTATGGGGATAGTGGCACTTATCAAGGCCAGTGGATGGGGGGCATGAGGCATGGCTATGGCGTCCGTCAGAGCGTGCCTTATGGAATGGCCACCATCATCCGTTCTCCGCTCCGCACCTCCCTGGCCTCTCTAAGAAGTGTGCAAAGCAACGGCGCCGTTCTCCAGGACACAGTACCAGACACTCCAGTTGGAAGCCGTGGTGGTTTCGTGCTGAATTTTCACAGCGACACCGAAGTCGTCACCGGTAAGAAGAAGGGCCTGTTCCGTCGCGGGTCTCTCTTTGGGAGCCTCCGCCAGCTGCGTAAATCTGACTCCAAAACGTCCATCTCTAGCAAGCGAAGCTCAGCACGTAGCGATGCCACCATGAGCCGCATCAGCTCCAGCGACGCCAACTCCACCATCAGCTATGGAGAAGGAGAGGTGCCTGATGATTACACGCCAATGGAGGACCACGTGGATGCCACCACCACTGAGTCCTACATGGGCGAATGGAAGAACGATAAGCGCAATGGGTTTGGGGTCAGTGAGAGATCCAACGGGCTGAAGTATGAAGGGGAATGGATGAACAACAAGAGGCATGGATACGGGTGCACCATATTCCCTGATGGAACCAAAGAGGAGGGGAAGTATAAAAATAACGTGCTGGTGCGCGGGATAAGGAAGCAGCTCATTCCTCTTAAAAACCATAAAACGAAGGAAAAAGTGGACCGGGCTGTGGAGGGGGCTCGAAGGTCGGCAGCTATCGCCAGGACGAAAGTGGAAATAGCAGTTTCAAGgacGTCCCACGCACGGACTAAGAGTGAAGCAGCAGACCAGGCCGCTCTCGCAGCATGTCAGGAGTCAGATTTAGCCCGAGCTGTGGCTTGTGAATTATCTCCAAGCTTCCATCAACCAGGACTGGAATACATCAAGCAGAAGTTCAGTGAGCCGGTGGAGGAGATTAAAGAAGAAGCACCCAAAGAAGAGGAGAAGAAGTCTTCAGGTAGCCCTTTCTACAGGCGCGGGACGACTCCGAGCCACTCTCCAGCCCAAAGCCCGACCCCATCCCCTCCCCGCACCTCTCAGAAAAGCCAAGCGCAGAACCCCAGCATTAGCCGCAAGATCAGCAAAGACAACAGCGTCACGGCCCGCAAGATCAGCAGAGACAGCACTTCTGTAGCCCGCAAGATCAGCAAAGAAGAGAGAGCCTCCATTGTGGCCGAAATCACCAAAGTATCCgtacctcctcctcctcttcctcctcctcctcctcctgcagtTCAGACTATCAAGCTGCAGGATGTCCCACCTCCAAAGCCTCCTAAAGCACTTGAACCCGTGGCCAAACCTGCGGGCACAGGTAACGGGCAGCTTCATACTGCCTATCACAGTTATTATGTGAAGCCGGTGAAGCAGTTGCCACCGCCAGAGGAGCCCGAAGATGAGGAGCCTGAAATCACACAGTCCAGTCTGGCCAGGATGCCTCCACCTCCCAAAACGCTCAACACACCCACTCCCAAACCAGAGGTCAAGATCAGGAAACAAGAGTCTATTAAACCAAAGAGCTTAGCTGAAACCAAGAAGGCCAGCTTGGACCTGGTTGAAGAAGCAACGGTGGAAGAATCTGGTCCTAACTCAATTCTGGTTGCCATGGTGATGCTTTTGAATATTGGATTGGCAATCATTTTTGTCCATTTCCTGACATGAAACACTACAATCTCAATGTTGGATGGAAACCCACACAGTTGTGTCAATGACCTTTCTGAAATCCAAACGGCAGCAGGCAGAGTCTCCAGAGGGTAGAGAAGCAGAAGAATCAACATCTGAAGAGTCTGAAACCCAGAGCATCATCCTCCACGTTGATGTCATGTAActggaaaaaagagagagagagagagagagagagcgacagAGAGAGATGAAAATATTTCGGGGGGGAAGAAAATGACCATTAAAGTGGAAACCGAAGAAGGGAATGCAGTGTAACGTGACTCATATCTGCTGATGGAAAGCCTTAATATCAGCCACTCTCCATAGGTCTCGGGCTTCTGGCAGAGACTTAA
>TCONS_00046193
TCTGAATGACGGGCGGACGGTTCGACTTCGACGATGGAGGCACTTACTGTGGCGGATGGGAGGACGGGAAAGCCCACGGACACGGCATCTGCACGGGACCCAAGGGTCAGGGCGAGTACTCCGGGTCCTGGTCCCACGGGTTTGAGGTAGTCGGGGTCTACACCTGGCCCAGCGGGAACACGTACCAGGGCTACTGGTCGCAGGGGAAGCGCCACGGGCTGGGTGTTGAGACCAAGGGGAAATGGCTTTATCGCGGGGAGTGGAGTCACGGGTTCAAGGGTCGCTATGGAGTTCGGCAGAGCACCAACACACCTGCTAGATATGATGGGACGTGGAGTAATGGACTGCAGGATGGATATGGAGTCGAAACCTATGGGGATAGTGGCACTTATCAAGGCCAGTGGATGGGGGGCATGAGGCATGGCTATGGCGTCCGTCAGAGCGTGCCTTATGGAATGGCCACCATCATCCGTTCTCCGCTCCGCACCTCCCTGGCCTCTCTAAGAAGTGTGCAAAGCAACGGCGCCGTTCTCCAGGACACAGTACCAGACACTCCAGTTGGAAGCCGTGGTGGTTTCGTGCTGAATTTTCACAGCGACACCGAAGTCGTCACCGGTAAGAAGAAGGGCCTGTTCCGTCGCGGGTCTCTCTTTGGGAGCCTCCGCCAGCTGCGTAAATCTGACTCCAAAACGTCCATCTCTAGCAAGCGAAGCTCAGCACGTAGCGATGCCACCATGAGCCGCATCAGCTCCAGCGACGCCAACTCCACCATCAGCTATGGAGAAGGAGAGGTGCCTGATGATTACACGCCAATGGAGGACCACGTGGATGCCACCACCACTGAGTCCTACATGGGCGAATGGAAGAACGATAAGCGCAATGGGTTTGGGGTCAGTGAGAGATCCAACGGGCTGAAGTATGAAGGGGAATGGATGAACAACAAGAGGCATGGATACGGGTGCACCATATTCCCTGATGGAACCAAAGAGGAGGGGAAGTATAAAAATAACGTGCTGGTGCGCGGGATAAGGAAGCAGCTCATTCCTCTTAAAAACCATAAAACGAAGGAAAAAGTGGACCGGGCTGTGGAGGGGGCTCGAAGGTCGGCAGCTATCGCCAGGACGAAAGTGGAAATAGCAGTTTCAAG

Function

symbol description
jph1a Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be part of junctional membrane complex. Predicted to be active in endoplasmic reticulum membrane; plasma membrane; and sarcoplasmic reticulum. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease axonal type 2K. Orthologous to human JPH1 (junctophilin 1).

GO:

id name namespace
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016529 sarcoplasmic reticulum cellular_component
GO:0005886 plasma membrane cellular_component
GO:0030314 junctional membrane complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040724-233 Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be part of junctional membrane complex. Predicted to be active in endoplasmic reticulum membrane; plasma membrane; and sarcoplasmic reticulum. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease axonal type 2K. Orthologous to human JPH1 (junctophilin 1).

Ensembl:

ensembl_id ENSDARG00000058603

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046192 False 3243 mRNA 0.51 6 14623831 14712427
TCONS_00046193 True 1147 mRNA 0.56 2 14706351 14711597

Neighbor

gene id symbol gene type direction distance location
XLOC_023358 pabpn1 coding downstream 46272 14559328 ~ 14577559 (-)
XLOC_023357 BX294113.2 coding downstream 87420 14533842 ~ 14536411 (-)
XLOC_023356 NA coding downstream 178695 14441954 ~ 14445136 (-)
XLOC_023355 xkr9 coding downstream 411310 14202327 ~ 14212521 (-)
XLOC_023354 CR450741.1 coding downstream 1014117 13609598 ~ 13609714 (-)
XLOC_023360 NA coding upstream 293085 15005512 ~ 15032354 (-)
XLOC_023361 cd226 coding upstream 401665 15114092 ~ 15263142 (-)
XLOC_023362 BX950202.1 coding upstream 501444 15213871 ~ 15213985 (-)
XLOC_023363 cbln2b coding upstream 930150 15642577 ~ 15648878 (-)
XLOC_023364 NA coding upstream 1032643 15745070 ~ 15749414 (-)
XLOC_023665 dre-mir-735 misc upstream 23465534 38177961 ~ 38178027 (-)
XLOC_023352 NA non-coding downstream 1266179 13355278 ~ 13357652 (-)
XLOC_023349 NA non-coding downstream 1377946 13224248 ~ 13245885 (-)
XLOC_023365 CU207257.1 non-coding upstream 1361662 16074089 ~ 16075115 (-)
XLOC_023366 NA non-coding upstream 1434076 16146503 ~ 16147518 (-)

Expression


Co-expression Network