G404641 (LOC106561807)


Basic Information

Item Value
gene id G404641
gene name LOC106561807
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 44735786 ~ 44739702 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU459099
CCTGGGAAAACTGTGTCCTGAGTCTCTTCTTGTCCCCGTTGAAGACATAGATTACACCTTTATTGTTGTCTTCCAGTGGAGCTCCCACCACCACATCACTGTAGCCATCCATGTTGAGGTCAGGCACCGCTGAGATAGACATCCCAAAACGAGCGTTCTCCACTGGGGACGGACCCTTCAGGAACCCCTGAACACTTAGGATGCCCttagtgaaggagaggagatggactTTCCCAATCTCCTTCTGCTGTTCGTTCATGAACATGGGAGCTCCAACCAGTAGTAGATCAGACACACCATCTTTATCCACATCCAGAGGACAGAGTACGCTGCCGTAGTAGGAGCCTATCTGGTCTCCTCTCTGGGAGTCGATGACGGTGGGCTGTCCCTTGCCGTTGATGATGTACACTATGACCTGTCCAGTGTGGTTGGACCGAGGAGCGCCAGCCACATAGTACTCTATGCTGCCATCGTTCAGCGTTGTCACAGAGTAGCCTAATAGTGAGCTGTGGTTTCTGTCCTCTAGGATTCTCTCAAAGGCCGTCTTGGGGAAGATGTCCGATTTCTGGGTGGTGTAGTGAACCACAGTACCACTCCAGCCATAGGCCCCCACTGCACCCAACATAATCATGTTCTGCTTCTTGGTTTGGTGGGCACTGAATCCCACTTGGGACATCTCCATCTGAAAGTCACCACCTTTCCCAGTACCCTCGATGTTGAAGATGCGGTCTCCCAGAGATCCAGCGATCTCGAGCAGAGCCTCCTCAGCTGATACGTTGAAGAAATACCTGTCTGTCGGGGTGCTGGCGATGGACTTGATCTCCGCAATCAGGTTCTTAGTGTCAATGTCATTCCTTATGTAATACCCAAGGacAGCAATACCAAAGCGGGTGATCTTCTCACTCTCACACTTCCTGATGACGTCGTCTCGGAGGTTCTTGTCGTGAGACTCTCCGTccgtcaccaccaccatcactttGCTGGCTCCGGGTCGAGCCCCGTTCCCGGGCAGGAACGCGTTCTGTCGAGCAAATTCAATGGCGCGGAAGGTGTTTGTCTCCAGGCCTTCCCTCTGGAGAATGTTCGCTGCAGCCGCAATGATCGAGTCTTTGGTTTTGTAGGCGTTCAGGTGGAATTCAACGACTGGCTCAACCCCGTACTGTAT

Function

NR:

description
integrin alpha-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU459099 True 1165 lncRNA 0.53 8 44735786 44739702

Neighbor

gene id symbol gene type direction distance location
LOC118964612 NA coding downstream 50247 44682942 ~ 44685539 (-)
LOC110523917 LOC106561827 coding downstream 112470 44610017 ~ 44623316 (-)
tcp4 NA coding downstream 129302 44590633 ~ 44606484 (-)
LOC110523916 ppip2 coding downstream 145724 44574333 ~ 44590062 (-)
LOC118964775 NA coding downstream 192045 44543613 ~ 44543741 (-)
LOC118936294 LOC106561814 coding upstream 13213 44752915 ~ 44757984 (-)
LOC110523920 LOC106561814 coding upstream 13213 44752915 ~ 44758266 (-)
arl15b arl15 coding upstream 40066 44779768 ~ 44853071 (-)
LOC110523925 LOC106562826 coding upstream 175482 44915184 ~ 44933176 (-)
LOC110522867 NA coding upstream 230509 44970211 ~ 44993581 (-)
G404623 NA non-coding downstream 18554 44714197 ~ 44717232 (-)
G404519 NA non-coding downstream 96035 44639496 ~ 44639751 (-)
G404507 NA non-coding downstream 102237 44633343 ~ 44633549 (-)
G404496 NA non-coding downstream 109431 44626052 ~ 44626355 (-)
G404643 LOC106561807 non-coding upstream 566 44740268 ~ 44741806 (-)
G404650 LOC106561792 non-coding upstream 22375 44762077 ~ 44762467 (-)
G404651 LOC106561792 non-coding upstream 23543 44763245 ~ 44763522 (-)
G404652 NA non-coding upstream 24668 44764370 ~ 44764784 (-)
G404654 LOC106561792 non-coding upstream 25361 44765063 ~ 44765529 (-)
G404520 NA other downstream 95741 44639801 ~ 44640045 (-)
G404357 NA other downstream 361912 44373498 ~ 44373874 (-)
G403104 NA other downstream 1187512 43544687 ~ 43548274 (-)
plac8.2 plac8 other downstream 2700145 42033371 ~ 42035641 (-)
G401190 denr other downstream 3293797 41417117 ~ 41441989 (-)
G404649 NA other upstream 21913 44761615 ~ 44762033 (-)
G404935 LOC106561730 other upstream 258534 44998236 ~ 44998709 (-)
G405292 LOC106561687 other upstream 451830 45191532 ~ 45192467 (-)
G405871 NA other upstream 845946 45585648 ~ 45586183 (-)
G405889 LOC106561608 other upstream 872726 45612428 ~ 45612955 (-)

Expression


Co-expression Network