G406077 (lcn2)


Basic Information

Item Value
gene id G406077
gene name lcn2
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 45977432 ~ 45982222 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU460695
AGGGACACTAGCATTTATTCAGCCATAGCGGTGTTATACAAGACAATGATGTCCCTTGTTTATCGGATTCAGAAAGGAAAACAAATTTAACTGTCCGTTGTACCGAGGggacaagagacagacagacatcagagAGGATGTTGGGAATAAAATAAGACGGGCTGTCTAAGAGTGCATCTGTCATTAGTGGTTATACTATTTCACCCTTGTGAGGTAAAGCGTGTTGAGGTTCGGTTGTTGCCCAGTGAAACGTGTGGTGTAAAGGTGAAACCCATCCTGATGCTGTGCTCCGATGGAGAGACAAATGTCTAATAGGTGCCGGGAAACTGGTGCGGCGAAGCAAATCAACGAGTAATCATGATGTTGCTCTGATCTGAAGGAGAGCACAAAAACAAAACCTGCAGTTTATTCAAAAATCAAGTGTTCCGGTAGTCAGTCGACCACAACATAGACTGTCTGTAGAAAGGATTTCCAGTGACTCACCTTAGCGTCCAGAGGGAGGACAGTTCTCTGCAAAttAGGCTACTACCTGCAGGTGGTGGGGTCAGAATGGCGTCCTTGGGAAATCCATGAGATGTGGCAAAGTCTTTAAATTTCTGAATCACTTCAGGCTTTACCTTCTGAGAACGACCATAGAGGGCCACCTGTGTGTACTCTCTGTCCATCTTCTTGTGCTTCAGGACCAGTGCATATTCATTATAGTTGGTCTCCACTACTGTGATGTCCTTTACTTTGTTATGGCGGGTGCTGAAATAGGTGAAGGCGCCAGGTATCGCTGTCTTCTCGTACGTGTAAAGCTTACTGCGGCAACCTGTTGATCTCTGGGTCCACATGGTGAGGTTGACGTCGCCGTTGGTCTGTGGATTCAAGATGCCCATGGACACTCTCAGCTTGTCTCTGTATGAGGCAGTAAACCCTGGGGAGTCATACGCCAGGCCCACACGGTACCACTTCCCTGCAAACTCTGCAGGTCGAAGTCTCTCTGAGGCTGCACGTCTCCATGGACACCCATCAAACACACCATCGCCGTGGCCATTGTCACAAAGGTGATCCTCATGGTTGGTtgcagaggaagagaaggaaagagagagaggaggagagaaagacaagTACCCTGTTCTGCAACCAAACTGAACTGTAAAAGAGT
>TU460697
ACCAAATCTAAAACAacgccaaatcaggaagtgcagttgCCCTTTAAAGTTATGCGTCACCTAATGAAAAACCAATACAACAGTATGCCATTGCCCTCTAAAAATGAGCTTAATCATTTCCCACAAAGATTAGATTACCCAGCTAGTGTGATGTGAAATGTCTTGTGGAAGCAGAGCAGGCCCTTCACTAATGCACCCTGGGTCGAAGTCTCTCTGAGGCTGCACGTCTCCATGGACACCCATCAAACACACCATCGCCGTGGCCATTGTCACAAAGGTGATCCTCATGGTTGGTtgcagaggaagagaaggaaagagagagaggaggagagaaagacaagTACCCTGTTCTGCAACCAAACTGAACTGTAAAAGAGT
>TU460698
AGGGACACTAGCATTTATTCAGCCATAGCGGTGTTATACAAGACAATGATGTCCCTTGTTTATCGGATTCAGAAAGGAAAACAAATTTAACTGTCCGTTGTACCGAGGggacaagagacagacagacatcagagAGGATGTTGGGAATAAAATAAGACGGGCTGTCTAAGAGTGCATCTGTCATTAGTGGTTATACTATTTCACCCTTGTGAGGTAAAGCGTGTTGAGGTTCGGTTGTTGCCCAGTGAAACGTGTGGTGTAAAGGTGAAACCCATCCTGATGCTGTGCTCCGATGGAGAGACAAATGTCTAATAGGTGCCGGGAAACTGGTGCGGCGAAGCAAATCAACGAGTAATCATGATGTTGCTCTGATCTGAAGGAGAGCACAAAAACAAACCTTAGCGTCCAGAGGGAGGACAGTTCTCTGCAAACAACAAAGAGCACGACAACGCTGTGTTACACACTGTCTGCTTTCAGTCGTACAGCTGAGAGACGGGAAATGTAGGgactgtttgtgtctgtgtgtgtgtccatacttAGGCTACTACCTGCAGGTGGTGGGGTCAGAATGGCGTCCTTGGGAAATCCATGAGATGTGGCAAAGTCTTTAAATTTCTGAATCACTTCAGGCTTTACCTTCTGAGAACGACCATAGAGGGCCACCTGTGTGTACTCTCTGTCCATCTTCTTGTGCTTCAGGACCAGTGCATATTCATTATAGTTGGTCTCCACTACTGTGATGTCCTTTACTTTGTTATGGCGGGTGCTGAAATAGGTGAAGGCGCCAGGTATCGCTGTCTTCTCGTACGTGTAAAGCTTACTGCGGCAACCTGTTGATCTCTGGGTCCACATGGTGAGGTTGACGTCGCCGTTGGTCTGTGGATTCAAGATGCCCATGGACACTCTCAGCTTGTCTCTGTATGAGGCAGTAAACCCTGGGGAGTCATACGCCAGGCCCACACGGTACCACTTCCCTGCAACCTCTGCAGGTCGAAGTCTCTCTGAGGCTGCACGTCTCCATGGACACCCATCAAACACACCATCGCCGTGGCCATTGTCACAAAGGTGATCCTCATGGTTGGTtgcagaggaagagaaggaaagagagagaggaggagagaaagacaagTACCCTGTTCTGCAACCAAACTGAACTGTAAAAGAGT

Function

symbol description
lcn2 Enables enterobactin binding activity; identical protein binding activity; and iron ion binding activity. Involved in defense response to bacterium and sequestering of iron ion. Located in extracellular space. Implicated in urinary tract infection. Biomarker of several diseases, including COVID-19; congenital diaphragmatic hernia; hidradenitis suppurativa; hypertension (multiple); and kidney disease (multiple).

NR:

description
neutrophil gelatinase-associated lipocalin isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU460695 False 1147 lncRNA 0.48 6 45977432 45982222
TU460697 False 378 lncRNA 0.46 2 45977432 45978066
TU460698 True 1166 lncRNA 0.48 6 45977432 45982222

Neighbor

gene id symbol gene type direction distance location
LOC110523936 LOC106561621 coding downstream 505381 45342639 ~ 45472051 (-)
morn5 LOC106561708 coding downstream 925190 45035746 ~ 45052242 (-)
LOC110522867 NA coding downstream 983851 44970211 ~ 44993581 (-)
LOC110523925 LOC106562826 coding downstream 1044256 44915184 ~ 44933176 (-)
arl15b arl15 coding downstream 1124361 44779768 ~ 44853071 (-)
LOC110523950 LOC106561514 coding upstream 37476 46019698 ~ 46023840 (-)
LOC110523952 LOC106568444 coding upstream 153190 46135412 ~ 46171517 (-)
LOC110523954 plgrkt coding upstream 319590 46301812 ~ 46322518 (-)
LOC110523958 ermp1 coding upstream 428734 46410956 ~ 46450430 (-)
LOC110523959 kiaa2026 coding upstream 485813 46468035 ~ 46480496 (-)
G406072 NA non-coding downstream 45976 45930040 ~ 45931456 (-)
G406062 NA non-coding downstream 59788 45917426 ~ 45917644 (-)
G406057 NA non-coding downstream 65642 45911191 ~ 45911790 (-)
G406049 NA non-coding downstream 79464 45897684 ~ 45897968 (-)
G405987 NA non-coding downstream 212307 45764403 ~ 45765125 (-)
G406155 NA non-coding upstream 85582 46067804 ~ 46068042 (-)
G406515 NA non-coding upstream 96920 46079142 ~ 46096671 (-)
G406566 NA non-coding upstream 189587 46171809 ~ 46172156 (-)
G406574 NA non-coding upstream 215165 46197387 ~ 46202512 (-)
G406654 NA non-coding upstream 353578 46335800 ~ 46338550 (-)
G405889 LOC106561608 other downstream 364477 45612428 ~ 45612955 (-)
G405871 NA other downstream 391249 45585648 ~ 45586183 (-)
G405292 LOC106561687 other downstream 784965 45191532 ~ 45192467 (-)
G404935 LOC106561730 other downstream 978723 44998236 ~ 44998709 (-)
G404649 NA other downstream 1215399 44761615 ~ 44762033 (-)
G406076 LOC100136563 other upstream 616 45977280 ~ 45989483 (-)
G406588 NA other upstream 237445 46219667 ~ 46234537 (-)
LOC110523962 LOC106561388 other upstream 622007 46572673 ~ 46610314 (-)
G408664 NA other upstream 2239730 48221952 ~ 48223220 (-)

Expression


Co-expression Network