XLOC_023377 (CR376737.1)


Basic Information

Item Value
gene id XLOC_023377
gene name CR376737.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 17136749 ~ 17139114 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046223
AAATGGGGGACTTGGAATCCGGTTTTGAGGAAATGCAGGGTGTTAAGCTTGGCTATTTGATTATCAAAGGCAAACAAATGTTTGCTCTCTCTCAAGTCTTCACCGACCTCTTGAAAAATATCCCGCGGACTACTGTACACAAACGAATGGACCATTTAAACGTGAAGAAGCATCACTGTGACCTGGAGGAACTACGAAAGCTCAAAGCAATAAATTCTATAGCTTTCCACGCAGCTAAATGCACTCTTATTTCAAGAGAGGACGTTGAGGCACTGTATTTTTCATGTAAAACTGAGCGCGTATTGAAATCAAACAAAAGAAGGGATAAGACAAAAACTTCCTCAGAGAAAATGTGCGACGGGAAAAATTACACATCTGCCAAAAGTGACTTTTGGAGAGAGAAAGTTTGGCTAAGTTTGCATGGCGTTCCACAGACGTTCTCATTCAAAAATAAAGCTGTTCGACAAGATCCTGTTTCTCGCAGTCACTCAAATCTACCTCAAATTTATAGCAAATCCTTCGCCCGTGACTTTCAACCGGTGGCGAAGTCGGCATCTACACCTTTTAAAAACTATGAAACAGATCAAATACCTGACAACTATGTGGCTTTTAATCAGAAACACACGTTTATTCGGCACGTTGTAAATCGGCAGCCGCTGCTCTATCAGTCCGCCATTGCAGCGCCGGCAAAGCACCAAGGCAACGCAGACCTACTTTACAAAAGGAAGAGGAAGCGCGAGAGCAGCGCGAGGCAGCTCTGGTCGAGAAGCAGACGCAGTCATCCGGTTTTGGTCGTCCCGAAGTGTTGTAAGCCAAAAGTTTCTAACGGATCTTTGAGCCAGTTTCACCACCTCGAACATGGATTTTACGTCGATCCTCGGAACACTGTGCATTTTCAGGAAAGCTGTAGCAGCGACACGGAATCTAGCACCATCTCAGAACGGGTGAACAACGATTCGGATTTCGGGTCGAGTTTTTCTACCACCAGCAACTCCGGGACTTcagacgaggaggaggaggatgactCTCTGTCGGATTCTTCAGATGTCAGTAGCGACGAGGAGAGCTCATCTCAGTCTGAATCGAGCTCTGTGTCAAGTCAAGTTTCAGTGCAGAGTATTCGTTTCAGGCGTGCAAGGTTCTCGAGTATCAACACAAAAGCACCTCTGCTGTTGCAGCCAACATTTCACTACAGGCCTAATGTGCAGACCATAGCTACTAACCAGGATTTAACGACTACTCTGGATTGCGAAAGAACTGGCAAAACTCAGAAATCGGACTTCGGTGACGCACACGAGAATGGTGATGCCGCAAATAATGTGCAGAAGTTCTGCTCAGTGCGGACCTGCTTTCCAGATTTGCGAGAAAAGGAGGATTCCGAAGCACCCTTGCGCCTTGAAGTTTCAAATGATCCAAAGACAACAGATTCTAACAAAATTAAGGAGATCAGGCTCACACCCAATACACTTGGGAACAAGGCGTTTCCCCAACAAAGAATACCGGCTTCTGCAAACAAATGCTCCCAAGGCTTGATCTCCCACTGTGTTCCGGACAAAGAAATAACGGTTTGTAAGTCTTCTGACAGCAATCTTTCATTAGTAGCAAATTTCAAGAGGGAAGTAAAAACTTCCCTCAAACTGCCTTCACCTATAAAACATATCAAAACTGAGGCCGAGGAGCTCATCAACAATGAGGGCAACAGGGCAGTAAAAACGCCACCATTTTTACTCAACAACGTGAAGATTAAAGTCGAGGACATCTTTGACGATTATGAATATGCAAAACAGCCCCCGGAGTATCAATGTAAGGATAATGACGCTGATGGCCAGTGCATCAGCGATCCTTTCAAGGAAACTGACCACTGGAAAGCCGCGGAGAGCTCTGGTCAAAAACACCCTGCCTGTAACGAGGAATCAAAAAGCACTTTAAACGCCCGTTGCTCTGAAGAAGAGGAATGCAAGAACGGTGTAAGAGTCCGGAAAAACTACAGGTCACttcttctgggtaaaaaagcCGAAAGTGCGAGGACATCTGCGAAATCAGCTTCAAAAGTTGACCGGAGCTCCCGTTCTGCTGGAAAATTCGCTAGCAGTGAAATATCGAGTGGAGACTGTGCTGGCACGAGCAAACGCAAACGGGCAAGTGCCAGTGTAGCATCTCTGAAAAAGCCCTTCAGGTTCATGGCGAATTTTCCCTCTCCACCGGCCCTTCTTATTGGCAACGATGGAGATTTGAGTCCCGCTTACTCTTTGAACTCTTCAAGAAGTAACCAACTGCCTCCTCGTTCTCACCCAGTTTGGAGATGGCAGCTCGGTCACTCAGTTGTTCCTCCCCCTCCAAGCCACAAATTCAGGAAAGCCTCTGTT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000077318

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046223 True 2366 processed_pseudogene 0.46 1 17136749 17139114

Neighbor

gene id symbol gene type direction distance location
XLOC_023376 NA coding downstream 9763 17124410 ~ 17126986 (-)
XLOC_023375 msrb2 coding downstream 69465 17040211 ~ 17067284 (-)
XLOC_023374 c8g coding downstream 97111 17031129 ~ 17039638 (-)
XLOC_023373 ptgdsb.1 coding downstream 107375 17027310 ~ 17029374 (-)
XLOC_023372 ptgdsb.2 coding downstream 113357 17021513 ~ 17023392 (-)
XLOC_023378 NA coding upstream 94412 17233526 ~ 17236200 (-)
XLOC_023379 cul1b coding upstream 225631 17364745 ~ 17400472 (-)
XLOC_023380 NA coding upstream 264356 17403470 ~ 17406483 (-)
XLOC_023381 NA coding upstream 270194 17409308 ~ 17413946 (-)
XLOC_023382 cntnap2a coding upstream 278036 17417150 ~ 18179535 (-)
XLOC_023665 dre-mir-735 misc upstream 21038847 38177961 ~ 38178027 (-)
XLOC_023368 CR354550.1 non-coding downstream 581766 16554869 ~ 16554983 (-)
XLOC_023367 NA non-coding downstream 913963 16204788 ~ 16222786 (-)
XLOC_023366 NA non-coding downstream 989231 16146503 ~ 16147518 (-)
XLOC_023365 CU207257.1 non-coding downstream 1061634 16074089 ~ 16075115 (-)
XLOC_023383 CR376742.1 non-coding upstream 407639 17546753 ~ 17546869 (-)
XLOC_023384 NA non-coding upstream 882460 18021574 ~ 18022214 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00019779 skida1 coding CM030124.1 CM030124.1 44239490 ~ 44241946 (-)