XLOC_023378


Basic Information

Item Value
gene id XLOC_023378
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 17233526 ~ 17236200 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00047171
TTTGAAACGTGAACACGGCTCTGAGCACCCAACTGAACAATAGTGGTGCTTTACTGGCTACCCCAGAGAGTCAGAACTGCTGTCCCCACAGGCCTCTGGCAGAATGATTGAAGCCGTTGATGTTGGACAGGAGTTCAGCTGGAAACAAGGGGGAAGGGACTCAAGAGGAGGAGTGTCCAAACTCCCAAGATGTGAATGAATAAACCCAGAAAAGGAGGAGGGTGCTGCTAAGAAGTGCAGGAAGATAGAAGAGCACAGAACAAGCAAGAGACAGAAAGAAAGTTTGAGAGAAAGCAAGGGCTGGAGAAAAATAGAGAGAAAGTGAGAAAGcaagcaggaggaggaggaggcatGTTTAAACAGTCCGAGTGTGATTGACAGCTCTGATAaggcaggagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagaaagagagagagagagaagagcatATGCAAGAGGAGGGGGATCAGACTCCCAATCTACTGCCAGAGGAAAGTGAGCTATTAATTACTAAAGCAGAAGCAGATGTAACAGAATGGAG

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0048731 system development biological_process
GO:0048732 gland development biological_process
GO:0001708 cell fate specification biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0048468 cell development biological_process
GO:0048747 muscle fiber development biological_process
GO:0021546 rhombomere development biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0007517 muscle organ development biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0045165 cell fate commitment biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:1901861 regulation of muscle tissue development biological_process
GO:0048568 embryonic organ development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0016202 regulation of striated muscle tissue development biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0048869 cellular developmental process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0048634 regulation of muscle organ development biological_process
GO:0071696 ectodermal placode development biological_process
GO:0048641 regulation of skeletal muscle tissue development biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032502 developmental process biological_process
GO:0060537 muscle tissue development biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00047171 True 578 lncRNA 0.48 2 17233526 17236200

Neighbor

gene id symbol gene type direction distance location
XLOC_023377 CR376737.1 coding downstream 94412 17136749 ~ 17139114 (-)
XLOC_023376 NA coding downstream 106540 17124410 ~ 17126986 (-)
XLOC_023375 msrb2 coding downstream 166242 17040211 ~ 17067284 (-)
XLOC_023374 c8g coding downstream 193888 17031129 ~ 17039638 (-)
XLOC_023373 ptgdsb.1 coding downstream 204152 17027310 ~ 17029374 (-)
XLOC_023379 cul1b coding upstream 128545 17364745 ~ 17400472 (-)
XLOC_023380 NA coding upstream 167270 17403470 ~ 17406483 (-)
XLOC_023381 NA coding upstream 173108 17409308 ~ 17413946 (-)
XLOC_023382 cntnap2a coding upstream 180950 17417150 ~ 18179535 (-)
XLOC_023383 CR376742.1 coding upstream 310553 17546753 ~ 17546869 (-)
XLOC_023665 dre-mir-735 misc upstream 20941761 38177961 ~ 38178027 (-)
XLOC_023368 CR354550.1 non-coding downstream 678543 16554869 ~ 16554983 (-)
XLOC_023367 NA non-coding downstream 1010740 16204788 ~ 16222786 (-)
XLOC_023366 NA non-coding downstream 1086008 16146503 ~ 16147518 (-)
XLOC_023384 NA non-coding upstream 785374 18021574 ~ 18022214 (-)
XLOC_023390 CR376786.1 non-coding upstream 1389052 18625252 ~ 18625367 (-)

Expression


Co-expression Network