XLOC_023380


Basic Information

Item Value
gene id XLOC_023380
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 17403470 ~ 17406483 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00047172
ATGTAGGTTTGCAAACCGTTATTAACCCCAAAAGAAGAAGGATCTCCAGTCAGGCTGAAGTAACACCACAGACCTAAACCTATTATAGCTGGACCTCTGAGACGAGCACAGGTCAGATTCAACAGCCCATCTTTATGTACCTATCGGCTATTTCGTTTTTCCATATAACTGAGGGAAATATGTTTATCAGTTTATTTCGTTAAGTCGCGTGTTGGGTTTTTACATTTGTCAGCCATTAATTATACACATGCTAAGTAATTAATTTTCAGCAGGTGAATAATGGGTGATTTAGGTTAATTTGTATTCATCTTACAATGCCATTGCTTTATTTGgcattgttttaattgtttaatgtattCCTCCGCGTCTGTTGAAATGAATATGTTAAATAGATGCTAGCTTGCATTGCTAGATGTTAGCTTTGCTGATATTTTGAGAGTGTAACAAATCATAAAACTGCCTGCTGTACCAAATGGTTGatgttgactgttttaaataatagtttacacactaggcattgttggtttacaaaaaatcaaacaaacacaatcatgttaaatgagaatctgaaatattttatggcatacttcaaaaaataaagatgatttagtattcaaaaatgttttattttgattgttttacatAAATTGGTCTTATGATTCATATATCCAGATCTTTcaaagtatatgtattaattacgatactttttaccataaaccgacttATCAaacatttggtagaggttgatattttagaaattatggggtgtgttgaaaaaaaaaaaagtgtgttaacTTGCAACATTAGgggttaagaaatgcaatccatttttttctttcttgctgGGGCGGTTAAAGGGTTAAGTCAAATTAATAGGTAATTATATGGGTTTGTGTTGAGAGaagttgattttatttgattccCTGTCAACTCTTTTGTTTCAgtgattcttttttattttgtacactaattaaaaaaaaaaaatttatatttaaattttaaagatatttgtaatCCTTGCTTAAATAAAATCAAGcaacaatataaatgtaaaatcatATGCTGAAATAACGTAAGTTGCTTTTAAGTGTTGtacttgttgtttttatttaacaatgtAATGAATTGGCAAATGAGTCACTACTTTAAATATGATTGattctttaaatgatttaatgaaaattattttcattaatcactttcattattttatttatcaaatgtcagtaaatacaaataaaattttaaatattttagatgtaATTAGATTATGTAACAATTTAAAGTGCTCATAATCAGATTAAAGTTGCCTTTCATGGATTATGATTGCATATTCGCacagtaaattaattaatagtcccctaattaattaattaattagtccCCTATTAATTAATAGTCGTTGTAGTTGTCATAAATTCATTTGGACTAAAATGCAACTCTCAaaccattattataataatagacatttttatgtaattatttattagtgatttatttaatttacttcttAAATTTTTTGGCCACTCTGTTATGGAGAAAAATAATTCTTAATGAGATTTCCgcccatatttgttttattaatatttaaaattttagttttatttgcatatttatatttagtgcACTAAATTTACAGACATTTTTGTTCATCAATGCCATTTTACCCAATATATTTACTTCATATtctgttaatattaaactatatCATATGAACATGTCAAAGCCTATTATTAAATATCACAAGAAAAATGGATTCAGacgttatttttgttttttttcttttcgcaGAAACATTGTTGACGTGGTTGGACACATTAAGATCGACCTGAATCTTCATCTGAATACAGCAGCCTTTCTTGTGTTCCATAGCCTTTAAATAGGTGTAAGGTTGCCAGCAAATCCACAATGGGACGATCAAGTGAAATTCCAGAAGCTGTTAAGGAAAAGATTGTTTTTTACCATAAGTCTGGTAAGGGATACAAATCCATTTCAAAGATTACAGGAATGCACCGATCCACCATCAGATCCATCATCCGCAAATGGAAAACAACTGGAACCTTAATGAACCTCCCCAGAAGTGGTCGACCGGTTAAAATCTCTCCGGGTGTAGAACTCAAAATCATGAATGAAATCGAAAAGAAACCCGACATCACTTCTAAAGAACTGCAGGCTTTCCTTGCCCTGACTAAAATTAAAGTTCATGACTCTACAATCAGAAGAACGCTGAGAAAACTAGGCTATGTCAAAGAGTATGCAGCTCAAAAACCATGCATAAAAGAAGAAATCGAGTCTCCTGATTTTGAGGAGAATGTTTTACAGAAAGAAGAGCTAAAGGGGGATTTTTCTGTGTAAAAGGAAGTCAGATTGTTCTATACTGTACAGTATTATATATCATTTTGAAGTAGTCTCATCGTATGAGACTCAACTGTAATATAAGAGGActgttcatttatattattattcatatggAAAGGAAATTAAAGTGTACagaatttaagttaattttgaTTAGTTGCTATCTGAAATATTGAATCATCTGTCAATGAGATTTATTGTCATCTCATTCATCCATTTTGTTTttgcacattaaaaaatataaaaatttcttTATATTGCTGCATGTACAATGCTTGAATGATGATAAAACTATTCAGAGATGGTTAGTAGCTATTTTGTGTTTTATGCTGCACAATTTTAATGAaactcttttatatatttttttattcttttggcTGAATTTATGGGAAATGGGggaaaaacattgtcaaaataatttattttattcctaaaataaaaataagttttaaatcaATCAACACAATTaacatagtaaaataataaatatgaaattgaatattttaatgaataattgtaaaatgcaaataaacatgtaaagactCATTAAACAAGTTTTAATAGTTCTG
>TCONS_00046228
CTGGTAGTCTCCTTCGTCTTTTGAAATCCTTGATTTCATGCTGTTTCAACCATGTGCTCCACACTAGGTGGCGGGAATGCACCATTTATGTAGGTTTGCAAACCGTTATTAACCCCAAAAGAAGAAGGATCTCCAGTCAGGCTGAAGTAACACCACAGACCTAAACCTATTATAGCTGGACCTCTGAGACGAGCACAGAAACATTGTTGACGTGGTTGGACACATTAAGATCGACCTGAATCTTCATCTGAATACAGCAGCCTTTCTTGTGTTCCATAGCCTTTAAATAGGTGTAAGGTTGCCAGCAAATCCACAATGGGACGATCAAGTGAAATTCCAGAAGCTGTTAAGGAAAAGATTGTTTTTTACCATAAGTCTGGTAAGGGATACAAATCCATTTCAAAGATTACAGGAATGCACCGATCCACCATCAGATCCATCATCCGCAAATGGAAAACAACTGGAACCTTAATGAACCTCCCCAGAAGTGGTCGACCGGTTAAAATCTCTCCGGGTGTAGAACTCAAAATCATGAATGAAATCGAAAAGAAACCCGACATCACTTCTAAAGAACTGCAGGCTTTCCTTGCCCTGACTAAAATTAAAGTTCATGACTCTACAATCAGAAGAACGCTGAGAAAACTAGGCTATGTCAAAGAGTATGCAGCTCAAAAACCATGCATAAAAGAAGAAATCGAGTCTCCTGATTTTGAGGAGAATGTTTTACAGAAAGAAGAGCTAAAGGGGGATTTTTCTGTGTAAAAGGAAGTCAGATTGTTCTATACTGTACAGTATTATATATCATTTTGAAGTAGTCTCATCGTATGAGACTCAACTGTAATATAAGAGGActgttcatttatattattattcatatggAAAGGAAATTAAAGTGTACagaatttaagttaattttgaTTAGTTGCTATCTGAAATATTGAATCATCTGTCAATGAGATTTATTGTCATCTCATTCATCCATTTTGTTTttgcacattaaaaaatataaaaatttcttTATATTGCTGCATGTACAATGCTTGAATGATGATAAAACTATTCAGAGATGGTTAGTAGCTATTTTGTGTTTTATGCTGCACAATTTTAATGAaactcttttatatatttttttattcttttggcTGAATTTATGGGAAATGGGggaaaaacattgtcaaaataatttattttattcctaaaataaaaataagttttaaatcaATCAACACAATTaacatagtaaaataataaatatgaaattgaatattttaatgaataattgtaaaatgcaaataaacatgtaaagactCATTAAACAAGTTTTAATAGTTCTG

Function

GO:

id name namespace
GO:0007267 cell-cell signaling biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0099177 regulation of trans-synaptic signaling biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0006811 ion transport biological_process
GO:0050804 modulation of chemical synaptic transmission biological_process
GO:1990351 transporter complex cellular_component
GO:0034702 ion channel complex cellular_component
GO:0034703 cation channel complex cellular_component
GO:0097060 synaptic membrane cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0045202 synapse cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:1902495 transmembrane transporter complex cellular_component
GO:0098794 postsynapse cellular_component
GO:0022803 passive transmembrane transporter activity molecular_function
GO:0022832 voltage-gated channel activity molecular_function
GO:0022836 gated channel activity molecular_function
GO:0022839 ion gated channel activity molecular_function
GO:0022843 voltage-gated cation channel activity molecular_function
GO:0022857 transmembrane transporter activity molecular_function
GO:0015267 channel activity molecular_function
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0005215 transporter activity molecular_function
GO:0005216 ion channel activity molecular_function
GO:0005244 voltage-gated ion channel activity molecular_function
GO:0005261 cation channel activity molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function
GO:0004970 ionotropic glutamate receptor activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function
GO:0008066 glutamate receptor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00047172 False 2927 lncRNA 0.29 1 17403470 17406396
TCONS_00046228 True 1334 lncRNA 0.34 2 17403470 17406483

Neighbor

gene id symbol gene type direction distance location
XLOC_023379 cul1b coding downstream 2998 17364745 ~ 17400472 (-)
XLOC_023378 NA coding downstream 167270 17233526 ~ 17236200 (-)
XLOC_023377 CR376737.1 coding downstream 264356 17136749 ~ 17139114 (-)
XLOC_023376 NA coding downstream 276484 17124410 ~ 17126986 (-)
XLOC_023375 msrb2 coding downstream 336186 17040211 ~ 17067284 (-)
XLOC_023381 NA coding upstream 2825 17409308 ~ 17413946 (-)
XLOC_023382 cntnap2a coding upstream 10667 17417150 ~ 18179535 (-)
XLOC_023383 CR376742.1 coding upstream 140270 17546753 ~ 17546869 (-)
XLOC_023384 NA coding upstream 615091 18021574 ~ 18022214 (-)
XLOC_023385 sec61g coding upstream 1037706 18444189 ~ 18446604 (-)
XLOC_023665 dre-mir-735 misc upstream 20771478 38177961 ~ 38178027 (-)
XLOC_023368 CR354550.1 non-coding downstream 848487 16554869 ~ 16554983 (-)
XLOC_023367 NA non-coding downstream 1180684 16204788 ~ 16222786 (-)
XLOC_023390 CR376786.1 non-coding upstream 1218769 18625252 ~ 18625367 (-)
XLOC_023393 CR384092.1 non-coding upstream 1882171 19288654 ~ 19288768 (-)

Expression


Co-expression Network