G408560


Basic Information

Item Value
gene id G408560
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 48054088 ~ 48068071 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU463462
cTGAAACTCTGATGACGAGAAAAGGGAGAGGCAGTTCAAGCTCAGTGAGGAAGTAATCAAATGCGATTGGATCCTCTTGTTTGCAATATATTAGTGAAATATGTCAAATGTGAATGGGCAGCAAAAGAAACAAACCCTTGAGATGCAACTAATACTAGATCAATACACAGATGGCTCAGGATTCACAAGACCAATAAAACCACATCCTGAACAGTGtagttgtcacgacttctgccgaagtcgttacctctccttgttcgggtggtgctcggcggtcgacgtcaccggttttcTAGCCATCACTGTTTTCAATCCCacacctgttgtgtatttaaccctctgtttcccctcatgtctttgtcagagattgttttattgtcagtgtagttttaggttgtataggtgcgcgtcgggtcctcgtacccatgtttgtttATGTCTGTACATTTttgtgttatggagcatgttacgtCGTCaattattaaaagactccatttacactccattttgactctcctgcgcctgacttccctgccacctatacacacgacgctGACAGTAGTTCTCAGGGGGTAGgtgttatgggtgtaagatggcacagtgatgccatctgttggtaaatgttcattactgcaactcatGTGTTTTACCGGTGTGTTTGAGATACCCGGATGTattgtgatgtactgaacaagactggttactcgcatcaatgcctgtctcgtcatttaacattcaaacagCAGGGTCCTAAATATGCATCACTGTTATCAGTCACCagagcaacaacaaaacaacaaggTTTAAGACAAAACAGTAGTTGGCCTCTAACTTTCCAGCTTACGGAGAAGAGacctcccactgggcacatactgattgaataaacattgtttccacatcatttcaatgaagGAGGCTTTGTCCTTGAAATACTGTTGTGATAGGATCTGTCCCTTTCCCTTCAGAGCACGGCTAGTCATTCTATAGGTTCTATAGTTGCCGTGGCAGCCTAGGCAGAGAATCATGTAAATGATGAAATATGTCTCATTAGCTAAAGGATTAGAATTACACATTCTGACGTCGGGTTGTTTTTCACCAACGGTGATCCAAGACGAGGATATACATGCAGAGTTGGCATTGGGACAACTTTTTCATTACTCAGGAGGATACTTCTGAAGTAAGGAGTGAGCTGTATTCTGTGGGGAGCTCAAACTTCATAGAGTCCCAATAAAGAATCTGCAGACGTCAGATACACCCTGATGACATCgagctgcctgccatcctgcGTGCTTGCCCTTGCACGTGCTGACCTGACCACCACCTCCGACCACCGCCTCCGCTGAGCATCTAGCTTCCGGATCTTCTCATGACCACGGCTGCCCATCTGGAGGCTTCAAGAAGCACTCAGACTTGATCCGACCATAAGCCGCTGCAGAGGGTACTGTAAATGGCCCAGTActtcactgggaccaagcttcctgccatccagaacctatatacgaggcggtgtcagaggaaagccccaaaaattgtcaaagactccagccacccaagtgactgttctctctgctaagtCTCGGTCCAaaaagctccttaacagcttctacccccacgccataagaatgctgaacaattaatcaaatggctaactggactatttgcattgaccccccccccccccccccacacttttgttttacactgctgcaactcgctgcttattatctatgctgagtcactttacccctacctacagtacatgtacttattacctcagttacctcgactaacttgtacccccgcacattgactcggtaccggtgccccctgtatatagcctcattattgttattttattgtttctttaaaaATGGGTTTATTTAGTTGATTTTGTAAATCATAcacttattttcttaaaactgtattgttgtaagtaagcatttcaaggtcagttcaagaagagtcaagaaaatatttaactaataaactaaagtaaaaaataataaaaagtaacacaataacataacaataatgaggctgtatacagggggtactggtactgagtcagtgtgcgggggtacaggttagaggtcatttgtacatgtagataatgaacagtagtgtactaaacaaatggagagtgggggggaggtcaatgtaatagtccggtggccatttgattaattgttcagcagtcttatggcttgggggtagaagctgttaaggagccttttggtcctagacttggcgctcagtctgttatataggtcctggattgcaggaatcttggccccagtgaagtactgggccatacacactaccatctgtagtgcgtttaattcaattttttttaacctttatttaactaggcaagtcagttaagaacaaattcttattttcaatgacgacagatttgtaccttgtcagctcggggatttgaacttgcaaccttccagctattagtccaacgctctaaccactaggctaccctgccgcccctgccgcgttacagtcagatgccaagcagttgccataccaggcggtgatgcaaccgatcaggatgctctcgatggtgcagctgtatcatatggtgtgtgtgtgtgtgtgtgtttgtttgtgcatgtctctctctgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgcatgtaagtGTGTCTGTGTTCTGGGGTGTGTATATCTCAATTTGTTCCCTGAACACACCTGATTGAAATGGAATAGGGCCTACTACACCGATCTGAaatacagagaaagaggagaggtggagaggaggtggaggtagagagctGGAGCTAACTACCTTTTTTACACACGCTAACTTTGAGTACTCCACTACCCAGGCACTCTTTGGGGGAGACACAGAAGCCTTCATTGGCTGGGTTCTCCTCCTTGCTGGCCAGTACGTCACGAGGAGGGGTGAAACGATATGCTGGGAGTCCCTTCACCTCCACATCCTTCTCAAACTCCATGAAGATGGACCTGAGGATCACAACAGAAAAAGTAATGTCTAACAGGGTGTCATATTGACGCCATGTCTCTTTTTCAAATGAGACCTGCacaataaaaaacacacacatcaataTAAAACACAATAAAATACTAAATTACAAACATGATTATGAAAAACAAGCACAATATTCACTTAGAGCATTCCCCACTAATGTTTAAAATGAATACAGCTCATAATATCTGCGGAACTATCTTGCTCACATTTGGACTGATATGAATGAATGGAGCCACACCAACAGTAAGGGTGGTCTTTTAATTAAATTAAGTGTTGCATTCCCCCTAGTGAAAAGGGTTACATTTTGCTAGTGAACTGTAGTGCACTAGACAATATGATAATGGTGTAGGCACCATACTGTAAACATGGCCATGGATTCTGTGGTGTTTAGAAAAGATGAATGCCAACACACAGTCTGAGCCAAGGCTGGAAGGATACTGTAAGCAGACCTGGGATCAAATAGTATTCGAAATCTTTCAAATCCTTTGAAAGTTTGTTCTAAGCTACTTGGAGGCGATTGTGAcgattctattggttccattatgCCAGGCAAGATGAAACAAGCACAGCTAAAGTATCTGAAATTATTACAAATAgtacttgaacccaggtctgactgTCAGGCCTTCAGGTAGGCCACCTGCAACAATGCTCTTTATTGTCTGAGACATGAGCTCATCTTTCAGAAAGCTGTGTAATGGTGAACATGTGTTGAACTACACTTGCTTCTACCCACACACCCTCCAATTTACATGCATAGGTTAGTCAAGGGGTCACAGGTCATGACACTCTTAACAAGTCACCCACAGGGGAAATTACTTCTGGAGATTCCTGAGGTACCGGTACCCaggtttctgatcaatttcaatTAAGTTAACTCAGGGCATAAACTGACATTCTAAACGTAATTGACCAAAACCCTAATGCTAACTCCAGATGATCTTTAAATTGTTTACATTCCTCTAATCTTGAAATCCACAACTAGAtctttaattttatttaactttaaatttatatatttatttttcatgaGAGATTAACATTCTTCCAATGTGGAATTAAACAGAAATTCcaaatggaattgatcccaaaACTGGTACATCCAGTTGACTTGATCCTTCGGTCATTGC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU463462 True 4174 lncRNA 0.43 4 48054088 48068071

Neighbor

gene id symbol gene type direction distance location
LOC110523978 LOC106605670 coding downstream 24412 48027781 ~ 48029676 (-)
LOC110523975 NA coding downstream 143843 47826801 ~ 47910245 (-)
LOC118964754 NA coding downstream 358406 47695630 ~ 47695682 (-)
LOC110523973 ctif coding downstream 391418 47530422 ~ 47662670 (-)
add1 LOC106561289 coding downstream 836444 47163745 ~ 47217644 (-)
nup54 nup54 coding upstream 38256 48106327 ~ 48125678 (-)
LOC110523983 LOC106560666 coding upstream 356794 48423554 ~ 48489102 (-)
pdcl pdcl coding upstream 472011 48540082 ~ 48544432 (-)
pdxp plpp coding upstream 506679 48574750 ~ 48580663 (-)
mier3a LOC105008092 coding upstream 578835 48646906 ~ 48693022 (-)
G408554 NA non-coding downstream 46055 48007689 ~ 48008033 (-)
G408553 NA non-coding downstream 48977 48004660 ~ 48005111 (-)
G408547 NA non-coding downstream 63342 47989597 ~ 47990746 (-)
G408502 NA non-coding downstream 148726 47890529 ~ 47905362 (-)
G408406 NA non-coding downstream 299936 47748914 ~ 47754152 (-)
G408591 NA non-coding upstream 32261 48100332 ~ 48102569 (-)
G408623 LOC106560682 non-coding upstream 95519 48163590 ~ 48164373 (-)
G408662 NA non-coding upstream 149401 48217472 ~ 48218065 (-)
G408663 NA non-coding upstream 150055 48218126 ~ 48218459 (-)
G408666 NA non-coding upstream 152203 48220274 ~ 48220492 (-)
LOC110523962 LOC106561388 other downstream 1443973 46572673 ~ 46610314 (-)
G406588 NA other downstream 1819551 46219667 ~ 46234537 (-)
LOC110523950 LOC106561514 other downstream 2030248 46019698 ~ 46023840 (-)
G406076 LOC100136563 other downstream 2064605 45977280 ~ 45989483 (-)
G405889 LOC106561608 other downstream 2441133 45612428 ~ 45612955 (-)
G408664 NA other upstream 153881 48221952 ~ 48223220 (-)
G408782 sec16a other upstream 285231 48353302 ~ 48357565 (-)
G410168 NA other upstream 1465845 49533916 ~ 49576456 (-)
G411459 NA other upstream 2550820 50618891 ~ 50619175 (-)
G411929 NA other upstream 2654243 50722314 ~ 50723061 (-)

Expression


Co-expression Network