G408623 (LOC106560682)


Basic Information

Item Value
gene id G408623
gene name LOC106560682
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 48163590 ~ 48164373 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU463536
CAGTTTGGAAAGGCTGGGCTTGGTGATTTTCAAGTCTGGTAAGGGTTCATGATGATAAGACTGTCCATGGAAGCCTTCAGGAGAGGGCTTGAGGTCCGGAGACTCGCTGGTCACCTGGTCCTGGCCGTCCATGGGCCGGACGTAGGCTGTGGGCTTCTGGGGCATGACCAGATTTGGTTTAGAGGCCAGTGGTAGAGGGAATGTCTGAGAGGGCAGGGTTGTTGCTCCCTCGATGGCCAGAAGTGGGATGTCTCTCTGGGGGTCATCCAGAGGGGACCCCTCCATTGGGACAGGGGAGTCGGGGTGCAGGAGGGATCCTTGGTGCCTGTCAGGGGTGTCCTGGGGCTCAGAGTCACTGGGGTCACTGGAATGTAGGGGGGATAGGGGCTCAGCTGGGGGGGACAGGGTGGAGAGGACCGGACTAAGACTGGCATACTCCCTCAGGTCTGGCCAGGGGCAGGGTTCAGCTTTCCCCTGGAGGGGATCAGGGCTGGCCAGGGCTTGACTGAGACCCAGTGAGGACTGGGTGTGGGAGGAGGGAACAGGGAGCCTCTTCAGAGGCTGAGAAGTTTGCCTGCTAATGGAGGGACCACCACTACCATTCTGGCCTGCCCCGtacagaggagtgttctggaatgCAGGCTTCACTCTGTCTCGGCTGTGAGATGGCCGCCTATATGTTGTGGTGACGTGAGATGGGGGGTCATTAGAGAAGCTACTGTCCAAACACAGATGAGAGTTGGagattttcaca

Function

NR:

description
AF4/FMR2 family member 1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU463536 True 754 lncRNA 0.58 2 48163590 48164373

Neighbor

gene id symbol gene type direction distance location
nup54 nup54 coding downstream 37912 48106327 ~ 48125678 (-)
LOC110523978 LOC106605670 coding downstream 133914 48027781 ~ 48029676 (-)
LOC110523975 NA coding downstream 253345 47826801 ~ 47910245 (-)
LOC118964754 NA coding downstream 467908 47695630 ~ 47695682 (-)
LOC110523973 ctif coding downstream 500920 47530422 ~ 47662670 (-)
LOC110523983 LOC106560666 coding upstream 260492 48423554 ~ 48489102 (-)
pdcl pdcl coding upstream 375709 48540082 ~ 48544432 (-)
pdxp plpp coding upstream 410377 48574750 ~ 48580663 (-)
mier3a LOC105008092 coding upstream 482533 48646906 ~ 48693022 (-)
LOC110523989 LOC106560554 coding upstream 565610 48729983 ~ 48847550 (-)
G408564 NA non-coding downstream 17579 48063783 ~ 48146011 (-)
G408591 NA non-coding downstream 61021 48100332 ~ 48102569 (-)
G408560 NA non-coding downstream 95519 48054088 ~ 48068071 (-)
G408561 NA non-coding downstream 104245 48056814 ~ 48059345 (-)
G408554 NA non-coding downstream 155557 48007689 ~ 48008033 (-)
G408662 NA non-coding upstream 53099 48217472 ~ 48218065 (-)
G408663 NA non-coding upstream 53753 48218126 ~ 48218459 (-)
G408666 NA non-coding upstream 55901 48220274 ~ 48220492 (-)
G408665 NA non-coding upstream 58927 48223300 ~ 48226856 (-)
G408669 NA non-coding upstream 65792 48230165 ~ 48255834 (-)
LOC110523962 LOC106561388 other downstream 1553475 46572673 ~ 46610314 (-)
G406588 NA other downstream 1929053 46219667 ~ 46234537 (-)
LOC110523950 LOC106561514 other downstream 2139750 46019698 ~ 46023840 (-)
G406076 LOC100136563 other downstream 2174107 45977280 ~ 45989483 (-)
G405889 LOC106561608 other downstream 2550635 45612428 ~ 45612955 (-)
G408664 NA other upstream 57579 48221952 ~ 48223220 (-)
G408782 sec16a other upstream 188929 48353302 ~ 48357565 (-)
G410168 NA other upstream 1369543 49533916 ~ 49576456 (-)
G411459 NA other upstream 2454518 50618891 ~ 50619175 (-)
G411929 NA other upstream 2557941 50722314 ~ 50723061 (-)

Expression


Co-expression Network