G408678


Basic Information

Item Value
gene id G408678
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 48348200 ~ 48349152 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU463596
CACTAAAGTGGACGAATAACTTCtaaaaattaagcacattaatccgctttaaaATGAGCGCAACTGGCgccgaagatgtggatgtcgattatgacagcctcccgcacctctctgattcagaggagttgggttgaatgcggaagacacatttcagttgaaatatttcagttgtacaattgactacgtatccccctttccccttacACAGTGTGTGAGTTTAAAGTTTGGGGACGATCATTTTCGCAATacaaatgcacctttataataaaagcattacatgcataatcacatttgctctcacttttgagaatggtgttttccacTAATGGAATATTCATGGttatagcctactgccttgtGGGGCATTGCTGCACTCATAATATGAAGAAATAggctaatagtttatcaacattttcagCTAAactttctgatctgttgcatcaggcTCATTGCTTAAAACAGTTTTTGATCCTAGTGTTTGTATTAATTTGGCATCTATCGCTTCCCACAAACACGTACAtttaatcgattttgctctatgaGGCGTTTGTgggaaatcccaggacattgtcacaaatgccaaactcaagacagttgtcactgacaagttggttactctttcccatttaacaactaaagccttgcaaaaagttaatcacctcacacactggaaatctgcaatggattcaccaaagtctactgagaatgagtaaatgttcaaagtcttatttttcaagagtcagttgagaattcgaccaagaccagagatttctgtttgcctggcaatctaacacagatttcctcgttaggggtttgcatacttgtcgaaatgacatgttcaaaacttcctgcattggccgggaatcgaacccgggcctcccgcgtggcaggcgagaattctaccactgaacaaccaatgccttggaaggctgagttaacctcaaaggcaggaa

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU463596 True 953 lncRNA 0.41 1 48348200 48349152

Neighbor

gene id symbol gene type direction distance location
nup54 nup54 coding downstream 222522 48106327 ~ 48125678 (-)
LOC110523978 LOC106605670 coding downstream 318524 48027781 ~ 48029676 (-)
LOC110523975 NA coding downstream 437955 47826801 ~ 47910245 (-)
LOC118964754 NA coding downstream 652518 47695630 ~ 47695682 (-)
LOC110523973 ctif coding downstream 685530 47530422 ~ 47662670 (-)
LOC110523983 LOC106560666 coding upstream 75713 48423554 ~ 48489102 (-)
pdcl pdcl coding upstream 190930 48540082 ~ 48544432 (-)
pdxp plpp coding upstream 225598 48574750 ~ 48580663 (-)
mier3a LOC105008092 coding upstream 297754 48646906 ~ 48693022 (-)
LOC110523989 LOC106560554 coding upstream 380831 48729983 ~ 48847550 (-)
G408667 NA non-coding downstream 68421 48256292 ~ 48279779 (-)
G408669 NA non-coding downstream 92366 48230165 ~ 48255834 (-)
G408665 NA non-coding downstream 121344 48223300 ~ 48226856 (-)
G408666 NA non-coding downstream 127708 48220274 ~ 48220492 (-)
G408663 NA non-coding downstream 129741 48218126 ~ 48218459 (-)
G408787 NA non-coding upstream 11265 48360417 ~ 48360742 (-)
G408817 NA non-coding upstream 47596 48396748 ~ 48397100 (-)
G408820 NA non-coding upstream 50870 48400022 ~ 48401091 (-)
G408821 NA non-coding upstream 52013 48401165 ~ 48401479 (-)
G408824 NA non-coding upstream 62512 48411664 ~ 48412145 (-)
G408664 NA other downstream 124980 48221952 ~ 48223220 (-)
LOC110523962 LOC106561388 other downstream 1738085 46572673 ~ 46610314 (-)
G406588 NA other downstream 2113663 46219667 ~ 46234537 (-)
LOC110523950 LOC106561514 other downstream 2324360 46019698 ~ 46023840 (-)
G406076 LOC100136563 other downstream 2358717 45977280 ~ 45989483 (-)
G408782 sec16a other upstream 4150 48353302 ~ 48357565 (-)
G410168 NA other upstream 1184764 49533916 ~ 49576456 (-)
G411459 NA other upstream 2269739 50618891 ~ 50619175 (-)
G411929 NA other upstream 2373162 50722314 ~ 50723061 (-)
G411930 NA other upstream 2374007 50723159 ~ 50724077 (-)

Expression


Co-expression Network