G408820


Basic Information

Item Value
gene id G408820
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 48400022 ~ 48401091 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU463750
GTTTAAATTAATAATGAATGTAataaattaaaatacatttaaaaaaatcctcCGTTCTTTttgatgaaataaaaaaatactccCTTTTTATCTCAAAATGTAATTTCTGAACAAGACAGCAGTGTGGTTCTGTTATCAAAATAGAAAAGGTATCACAGGGTCATACTCACAGTGGCTGAGGCGGGCATCCTCCCAGACATCAGTTGGTACACTGTCTGCAGAGGGTCGTTGATGGGCAGACTGTTCGCAAACCTGACCACCCCAAGAAAAAAGGATCACAAGTTTAATCTTTTTCAGTCAATACATTCACCTCTTTTTTGGATAGCTAACGTCTTCtggtattttgtgtgttttttctaCGTTGAGCAACTTTTTTGtacatacaatgccttcagagagtattcctaccccttgacttattccacattttgctgtgttacaacCTGCATTCAAAATGGATTGCATATATTTTCTTCTCCCCTACctacacacaatattccataacgacagagagaaaaaaagtttagaacatttattgaaaacgaaatacagaaataaactaaATGACCAAAAGCTTGCtggtccaacatctcattccaaaatcatgggtattaatatggagttggtcccccctttgctgctataacagcctccaccctTCTGGGGaggactttccactagatgttggaacattgctgtggggacctgctcctattcagccacaagagcattagtgaggtcgggcactagctcgcagtcggtgttccaattcatcctaaaggtgttcgatggggtggaggtcagggctctgtgcaggccagtcaagttcttccacaccgatcccgacaaaccatttctgtatggacctcgctttgtgcacgggggcattgtcatgctgaaacaggaaaacgacactgttgcctagtcactttacccctacctaaatgtacatatctacctcaattacctcatacccgtgcacatcaactcagtactcgTACCCCGTGTATAcactgcatttggaaagtattcagaccccttgaattttttgtgagattacagccttattc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU463750 True 1070 lncRNA 0.41 1 48400022 48401091

Neighbor

gene id symbol gene type direction distance location
nup54 nup54 coding downstream 274344 48106327 ~ 48125678 (-)
LOC110523978 LOC106605670 coding downstream 370346 48027781 ~ 48029676 (-)
LOC110523975 NA coding downstream 489777 47826801 ~ 47910245 (-)
LOC118964754 NA coding downstream 704340 47695630 ~ 47695682 (-)
LOC110523973 ctif coding downstream 737352 47530422 ~ 47662670 (-)
LOC110523983 LOC106560666 coding upstream 23774 48423554 ~ 48489102 (-)
pdcl pdcl coding upstream 138991 48540082 ~ 48544432 (-)
pdxp plpp coding upstream 173659 48574750 ~ 48580663 (-)
mier3a LOC105008092 coding upstream 245815 48646906 ~ 48693022 (-)
LOC110523989 LOC106560554 coding upstream 328892 48729983 ~ 48847550 (-)
G408817 NA non-coding downstream 2922 48396748 ~ 48397100 (-)
G408787 NA non-coding downstream 39280 48360417 ~ 48360742 (-)
G408678 NA non-coding downstream 50870 48348200 ~ 48349152 (-)
G408667 NA non-coding downstream 120243 48256292 ~ 48279779 (-)
G408669 NA non-coding downstream 144188 48230165 ~ 48255834 (-)
G408821 NA non-coding upstream 74 48401165 ~ 48401479 (-)
G408824 NA non-coding upstream 10573 48411664 ~ 48412145 (-)
G408823 NA non-coding upstream 12163 48413254 ~ 48413985 (-)
G408825 NA non-coding upstream 13884 48414975 ~ 48415257 (-)
G408826 sec16a non-coding upstream 14250 48415341 ~ 48415734 (-)
G408782 sec16a other downstream 42457 48353302 ~ 48357565 (-)
G408664 NA other downstream 176802 48221952 ~ 48223220 (-)
LOC110523962 LOC106561388 other downstream 1789907 46572673 ~ 46610314 (-)
G406588 NA other downstream 2165485 46219667 ~ 46234537 (-)
LOC110523950 LOC106561514 other downstream 2376182 46019698 ~ 46023840 (-)
G410168 NA other upstream 1132825 49533916 ~ 49576456 (-)
G411459 NA other upstream 2217800 50618891 ~ 50619175 (-)
G411929 NA other upstream 2321223 50722314 ~ 50723061 (-)
G411930 NA other upstream 2322068 50723159 ~ 50724077 (-)
LOC110524003 LOC106613485 other upstream 2778667 51179758 ~ 51228505 (-)

Expression


Co-expression Network