Gene
RNA
| Item | Value |
|---|---|
| gene id | G408826 |
| gene name | sec16a |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048569.1 |
| NCBI id | CM023223.2 |
| chromosome length | 100798064 |
| location | 48415341 ~ 48415734 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| sec16a | Predicted to act upstream of or within COPII vesicle coating; autophagy; and protein transport. Predicted to be located in Golgi apparatus; endoplasmic reticulum; and membrane. Orthologous to human SEC16A (SEC16 homolog A, endoplasmic reticulum export factor). |
| description |
|---|
| protein transport protein Sec16A isoform X3 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU463756 | True | 394 | lncRNA | 0.57 | 1 | 48415341 | 48415734 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| nup54 | nup54 | coding | downstream | 289663 | 48106327 ~ 48125678 (-) |
| LOC110523978 | LOC106605670 | coding | downstream | 385665 | 48027781 ~ 48029676 (-) |
| LOC110523975 | NA | coding | downstream | 505096 | 47826801 ~ 47910245 (-) |
| LOC118964754 | NA | coding | downstream | 719659 | 47695630 ~ 47695682 (-) |
| LOC110523973 | ctif | coding | downstream | 752671 | 47530422 ~ 47662670 (-) |
| LOC110523983 | LOC106560666 | coding | upstream | 9131 | 48423554 ~ 48489102 (-) |
| pdcl | pdcl | coding | upstream | 124348 | 48540082 ~ 48544432 (-) |
| pdxp | plpp | coding | upstream | 159016 | 48574750 ~ 48580663 (-) |
| mier3a | LOC105008092 | coding | upstream | 231172 | 48646906 ~ 48693022 (-) |
| LOC110523989 | LOC106560554 | coding | upstream | 314249 | 48729983 ~ 48847550 (-) |
| G408825 | NA | non-coding | downstream | 84 | 48414975 ~ 48415257 (-) |
| G408823 | NA | non-coding | downstream | 1356 | 48413254 ~ 48413985 (-) |
| G408824 | NA | non-coding | downstream | 3196 | 48411664 ~ 48412145 (-) |
| G408821 | NA | non-coding | downstream | 13862 | 48401165 ~ 48401479 (-) |
| G408820 | NA | non-coding | downstream | 14250 | 48400022 ~ 48401091 (-) |
| G408855 | rl28 | non-coding | upstream | 66064 | 48481798 ~ 48484591 (-) |
| G408873 | NA | non-coding | upstream | 93803 | 48509537 ~ 48509835 (-) |
| G408875 | NA | non-coding | upstream | 97886 | 48513620 ~ 48513830 (-) |
| G408856 | NA | non-coding | upstream | 116688 | 48532422 ~ 48537040 (-) |
| G408782 | sec16a | other | downstream | 57776 | 48353302 ~ 48357565 (-) |
| G408664 | NA | other | downstream | 192121 | 48221952 ~ 48223220 (-) |
| LOC110523962 | LOC106561388 | other | downstream | 1805226 | 46572673 ~ 46610314 (-) |
| G406588 | NA | other | downstream | 2180804 | 46219667 ~ 46234537 (-) |
| LOC110523950 | LOC106561514 | other | downstream | 2391501 | 46019698 ~ 46023840 (-) |
| G410168 | NA | other | upstream | 1118182 | 49533916 ~ 49576456 (-) |
| G411459 | NA | other | upstream | 2203157 | 50618891 ~ 50619175 (-) |
| G411929 | NA | other | upstream | 2306580 | 50722314 ~ 50723061 (-) |
| G411930 | NA | other | upstream | 2307425 | 50723159 ~ 50724077 (-) |
| LOC110524003 | LOC106613485 | other | upstream | 2764024 | 51179758 ~ 51228505 (-) |
