G408855 (rl28)


Basic Information

Item Value
gene id G408855
gene name rl28
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 48481798 ~ 48484591 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU463790
caaaaggtcgcaaagttcaagggggccgaatactttcgcaaggcactgtagtgttgggctggaacaaaagccacTACACCCTGTTGGTCCCAAGGACCAATATTGAAGACCAATAGAAAAACCAAGAGGTTTAGTAGATAGAGGGCTCACCATGCGCAGGTCCTTCCTGTAGTTGTTCTTGCGGATGATGTGCCTCAGGCTGCTCAGAGTGGCGCGGGAGTTCTTGTTGATGGTGATCTTCTCATATGAAGTGGCAGGCTTGCGCTGGCCGCGCGCTTCTTCAGCACGATAACCACACCCTTGCCATCAGCTGCAGGCTGAACACCAACAGTCTTTCTGTGCACTAGGCCGTTGAAACGGAAAGAGTTCTTGGACTTCAGGTTGTTGGGCTCGGTACTGTAGGTCTGTCCATTCCTCTTGATGAGGAAGCTGGAGCAGTTCCTAATGACCATCCACTGCAGATGAGACGACATGTTGACAAACCTGGGGCAGACAAGAAGCGTCAATAGAAGTTACATAACAGTAACCAAAGACACATGTTCCCCCAAAAACTAACATTAGCTTACTCAGTAC

Function

NR:

description
PREDICTED: 60S ribosomal protein L28 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU463790 True 573 lncRNA 0.50 3 48481798 48484591

Neighbor

gene id symbol gene type direction distance location
LOC110523983 LOC106560666 coding downstream 33910 48423554 ~ 48489102 (-)
nup54 nup54 coding downstream 356120 48106327 ~ 48125678 (-)
LOC110523978 LOC106605670 coding downstream 452122 48027781 ~ 48029676 (-)
LOC110523975 NA coding downstream 571553 47826801 ~ 47910245 (-)
LOC118964754 NA coding downstream 786116 47695630 ~ 47695682 (-)
pdcl pdcl coding upstream 55491 48540082 ~ 48544432 (-)
pdxp plpp coding upstream 90159 48574750 ~ 48580663 (-)
mier3a LOC105008092 coding upstream 162315 48646906 ~ 48693022 (-)
LOC110523989 LOC106560554 coding upstream 245392 48729983 ~ 48847550 (-)
notch1 notch1 coding upstream 396802 48881393 ~ 48954869 (-)
G408826 sec16a non-coding downstream 66064 48415341 ~ 48415734 (-)
G408825 NA non-coding downstream 66541 48414975 ~ 48415257 (-)
G408823 NA non-coding downstream 67813 48413254 ~ 48413985 (-)
G408824 NA non-coding downstream 69653 48411664 ~ 48412145 (-)
G408821 NA non-coding downstream 80319 48401165 ~ 48401479 (-)
G408873 NA non-coding upstream 24946 48509537 ~ 48509835 (-)
G408875 NA non-coding upstream 29029 48513620 ~ 48513830 (-)
G408856 NA non-coding upstream 47831 48532422 ~ 48537040 (-)
G408891 NA non-coding upstream 60478 48545069 ~ 48545365 (-)
G408894 NA non-coding upstream 67633 48552224 ~ 48552468 (-)
G408782 sec16a other downstream 124233 48353302 ~ 48357565 (-)
G408664 NA other downstream 258578 48221952 ~ 48223220 (-)
LOC110523962 LOC106561388 other downstream 1871683 46572673 ~ 46610314 (-)
G406588 NA other downstream 2247261 46219667 ~ 46234537 (-)
LOC110523950 LOC106561514 other downstream 2457958 46019698 ~ 46023840 (-)
G410168 NA other upstream 1049325 49533916 ~ 49576456 (-)
G411459 NA other upstream 2134300 50618891 ~ 50619175 (-)
G411929 NA other upstream 2237723 50722314 ~ 50723061 (-)
G411930 NA other upstream 2238568 50723159 ~ 50724077 (-)
LOC110524003 LOC106613485 other upstream 2695167 51179758 ~ 51228505 (-)

Expression


Co-expression Network