G409219


Basic Information

Item Value
gene id G409219
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 48605653 ~ 48606623 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU464230
tttagaatattggttccaaaataatatcctattggtgagccaactggtaaatgcagagggtcttttactcagttataaggaattcttatcactttacaagatccctgtaacacctaaagattttgcaattgttttagatgccattccctcaggtgttgctttattattcaggaacatgtcaagacctgaccctcagagcctaccttctgttgaccctgttgactcatcagtagaaaatatttgtttctcttttggtccattcaacaacagagcgatatgaaccttgtttcagcaggatgttgtatctatatcttgtcatgccttattggaatggatttattgataaaatctgttggaaaaaagtttggatgttgccacacacatacctacttgttaactaaattaaggaagtttcctttaaaattgttcataaatattatcctgccaaccactatatgaggaagtttaaggaaaacatcaactcaaaatgctcattttgtaatgaccacgcagaaacagtgttgcatcttttttggcattgtattcatgtaagaaaactggcaagacatcagtagatttataattgaacacatttaggATCTTACACTATTGTGGATAGATCtactgcttggattctttacctacaatagaaataagctgaaacatttttatgtaattaatttcattattcttttggccaaatttcatattcacaaatttaaatttacaaacaaaacaccacattttcttacctcacaaaaataaattaaactgtattttaagacgattaaataaatacagaaaatCTGTTAGAATAATAAGTGtatgtatgtcccttaaggtccttgtgtaatgtgatattgtactcCCTAGCCCAATTGTCctttgtatattatttatatatacttgtgttcccaCATGTACTTcttgtattgatttgttgtgaataaaaaaataaaaatagaggGTGA
>TU464231
gcgatatgaaccttgtttcagcaggatgttgtatctatatcttgtcatgccttattggaatggatttattgataaaatctgttggaaaaaagtttggatgttgccacacacatacctacttgttaactaaattaaggaagtttcctttaaaattgttcataaatattatcctgccaaccactatatgaggaagtttaaggaaaacatcaactcaaaatgctcattttgtaatgaccacgcagaaacagtgttgcatcttttttggcattgtattcatgtaagaaaactggcaagacatcagtagatttataattgaacacatttaggATCTTACACTATTGTGGATAGATCtactgcttggattctttacctacaatagaaataagctgaaacatttttatgtaattaatttcattattcttttggccaaatttcatattcacaaatttaaatttacaaacaaaacaccacattttcttacctcacaaaaataaattaaactgtattttaagacgattaaataaatacagaaaatCTGTTAGAATAATAAGTGtatgtatgtcccttaaggtccttgtgtaatgtgatattgtactcCCTAGCCCAATTGTCctttgtatattatttatatatacttgtgttcccaCATGTACTTcttgtattgatttgttgtgaataaaaaaataaaaatagaggGTGA
>TU464232
taaagattttgcaattgttttagatgccattccctcaggtgttgctttattattcaggaacatgtcaagacctgaccctcagagcctaccttctgttgaccctgttgactcatcagtagaaaatatttgtttctcttttggtccattcaacaacagagcgatatgaaccttgtttcagcaggatgttgtatctatatcttgtcatgccttattggaatggatttattgataaaatctgttggaaaaaagtttggatgttgccacacacatacctacttgttaactaaattaaggaagtttcctttaaaattgttcataaatattatcctgccaaccactatatgaggaagtttaaggaaaacatcaactcaaaatgctcattttgtaatgaccacgcagaaacagtgttgcatcttttttggcattgtattcatgtaagaaaactggcaagacatcagtagatttataattgaacacatttaggATCTTACACTATTGTGGATAGATCtactgcttggattctttacctacaatagaaataagctgaaacatttttatgtaattaatttcattattcttttggccaaatttcatattcacaaatttaaatttacaaacaaaacaccacattttcttacctcacaaaaataaattaaactgtattttaagacgattaaataaatacagaaaatCTGTTAGAATAATAAGTGtatgtatgtcccttaaggtccttgtgtaatgtgatattgtactcCCTAGCCCAATTGTCctttgtatattatttatatatacttgtgttcccaCATGTACTTcttgtattgatttgttgtgaataaaaaaataaaaatagaggGTGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU464230 False 971 lncRNA 0.32 1 48605653 48606623
TU464231 False 700 lncRNA 0.30 1 48605653 48606352
TU464232 True 857 lncRNA 0.32 1 48605653 48606509

Neighbor

gene id symbol gene type direction distance location
pdxp plpp coding downstream 24990 48574750 ~ 48580663 (-)
pdcl pdcl coding downstream 61221 48540082 ~ 48544432 (-)
LOC110523983 LOC106560666 coding downstream 157765 48423554 ~ 48489102 (-)
nup54 nup54 coding downstream 479975 48106327 ~ 48125678 (-)
LOC110523978 LOC106605670 coding downstream 575977 48027781 ~ 48029676 (-)
mier3a LOC105008092 coding upstream 40283 48646906 ~ 48693022 (-)
LOC110523989 LOC106560554 coding upstream 123360 48729983 ~ 48847550 (-)
notch1 notch1 coding upstream 274770 48881393 ~ 48954869 (-)
col27a1a LOC106560409 coding upstream 481912 49088535 ~ 49370988 (-)
LOC110523994 rax coding upstream 1051363 49657986 ~ 49663582 (-)
G408916 NA non-coding downstream 17871 48587459 ~ 48587782 (-)
G408914 NA non-coding downstream 18919 48586522 ~ 48586734 (-)
G408912 NA non-coding downstream 19981 48585427 ~ 48585672 (-)
G408895 NA non-coding downstream 52454 48552887 ~ 48553199 (-)
G408894 NA non-coding downstream 53185 48552224 ~ 48552468 (-)
G409218 NA non-coding upstream 34591 48641214 ~ 48645375 (-)
G409305 NA non-coding upstream 178913 48785536 ~ 48792880 (-)
G409306 NA non-coding upstream 179446 48786069 ~ 48793643 (-)
G409308 NA non-coding upstream 182309 48788932 ~ 48796706 (-)
G409418 NA non-coding upstream 380179 48986802 ~ 48987055 (-)
G408782 sec16a other downstream 248088 48353302 ~ 48357565 (-)
G408664 NA other downstream 382433 48221952 ~ 48223220 (-)
LOC110523962 LOC106561388 other downstream 1995538 46572673 ~ 46610314 (-)
G406588 NA other downstream 2371116 46219667 ~ 46234537 (-)
LOC110523950 LOC106561514 other downstream 2581813 46019698 ~ 46023840 (-)
G410168 NA other upstream 927293 49533916 ~ 49576456 (-)
G411459 NA other upstream 2012268 50618891 ~ 50619175 (-)
G411929 NA other upstream 2115691 50722314 ~ 50723061 (-)
G411930 NA other upstream 2116536 50723159 ~ 50724077 (-)
LOC110524003 LOC106613485 other upstream 2573135 51179758 ~ 51228505 (-)

Expression


Co-expression Network