XLOC_023386 (zgc:112332)


Basic Information

Item Value
gene id XLOC_023386
gene name zgc:112332
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 18448108 ~ 18467064 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046241
AATCACAGCGGACGCTGGAGCGCGCAGCACTACTGTCTGCTGAGGACAACACACAACACTGAAACCATGCACTCCATAAGAAATTTCTTCTGTGGCCAGTGGAGCTCTTCAGTACGTCTGGATGAAAAAACAGTCATTATCACAGGAGCGAATACAGGCATTGGCAAAGAGACAGCTAGAGACCTTGCGAGAAGagGGGCGAGAGTCATCATGGCCTGTCGAGACCTCGAGAAGGCAGAGGCTGCCAGAAGAGAATTAATGGACAATTCTGCAAACCAAAACATTGTGGTGAAAAAACTTGATTTAGCCGATACCAAATCCATCAAAGCATTTGCAGAGCTCATAAACAAGGaagaaaagcAAGTCAATATTCTGATCAATAATGCTGGAATCATGATGTGCCCATATTCAAAAACAGCGGATGGCTTTGAGATGCAGTTTGGAGTAAACCATTTagGTCATTTTCTGCTCATTTACCTTCTGCTGGACCTCCTAAAGAAATCAACCCCCTCCAGGATCGTCAACGTGGCATCTGTGGCCCATACTTGGAGTGGCATCCATCTGGAGGACATAAACAGTGAGAAGGTTTACTCTCCACGCAGGGCTTACGGACAGAGCAAACTAGCCAACATCCTCTGCACACGCTCCTTGGCTAAAAGACTACAGGGCAGTGGTGTGAATGTCTACTCTCTCCATCCTGGTGTGGTTCAgtcagagctgttcagaaacctCAGCAAACCTGCGCAGATCGCATTCAAGGTCTTCAGCCCCTTCACCAAGACCACCAGTCAGGGAGCACAGACCACCATCTACTGCGCCATAGAGCCCGAACTGGACAGAGAGAGCGGAGGATATTACAGTGACTGTGGCCCGGCTCAGTGTTCAAGAGAAGCTTCAGATGATGAAATGGCTCAGAAACTCTGGGAACTGAGCTGTCAGATGCTCGGCATTATATGGGATTGATAGAGCGCTCCTCTTAGTGACAATGATGTAAGATTGGAATGAAAGCTTTTGTGCTAATGTCAAAGATAACCCAAACTCTAGAACTCATACAATGCATGCCTGAATCAacactatactgtatgtattatattgtatattaaatacTGTTTTTTAATACTTTTGCCGATGCTGTTATAATTTCACAAGACATAATGAACTGttatgaattaaaatatatttgagattattaaatatttttatcatgCA
>TCONS_00046242
ACTGCTGAATGCTGAAACACTCGCCTTTTTcattaagcaaagcaaaacagatcagatAAGCAAAgggcattttatttacatttttaacatattttcccCACTCAGCCATTCCAAACTCTCCTAGCTTTCTCCATTCAAGGAGAGCAAAAGAGTCTGACCCACATGCCccactttttactgatgacgctaaccgtccagtaacccgtttttggtttcaaaaacatctAAAAGAAGTCCTTCGCCTTTCGGGCTTTTCCCCCGAATTGTATTCCAGCCATTCATTTAGAATTGGCGCAGCCACCACAGCAGCTCACAAAGGTCTATCCCCACACCAAATCCAGACCCTAGGCCGCTGGTCCTCCGATGCCTTCAAAGCTTACATTCGCCTCAGCCGATCCCACCTCAAGACAGCCCAGCTAGCCCTAATCAGCTAAATTCCAAACTCCAACTAGGGGTCATTTTCTGCTCATTTACCTTCTGCTGGACCTCCTAAAGAAATCAACCCCCTCCAGGATCGTCAACGTGGCATCTGTGGCCCATACTTGGAGTGGCATCCATCTGGAGGACATAAACAGTGAGAAGGTTTACTCTCCACGCAGGGCTTACGGACAGAGCAAACTAGCCAACATCCTCTGCACACGCTCCTTGGCTAAA
>TCONS_00046243
GCACTACTGTCTGCTGAGGACAACACACAACACTGAAACCATGCACTCCATAAGAAATTTCTTCTGTGGCCAGTGGAGCTCTTCAGTACGTCTGGATGAAAAAACAGTCATTATCACAGGAGCGAATACAGGCATTGGCAAAGAGACAGCTAGAGACCTTGCGAGAAGagGGGCGAGAGTCATCATGGCCTGTCGAGACCTCGAGAAGGCAGAGGCTGCCAGAAGAGAATTAATGGACAATTCTGCAAACCAAAACATTGTGGTGAAAAAACTTGATTTAGCCGATACCAAATCCATCAAAGCATTTGCAGAGCTCATAAACAAGGaagaaaagcAAGTCAATATTCTGATCAATAATGCTGGAATCATGATGTGCCCATATTCAAAAACAGCGGATGGCTTTGAGATGCAGTTTGGAGTAAACCATTTaggtaaaagcatttttttgctatttcatttatgtattacaataaaaagtgACAATATCTATCTGTTCCAAACACAATTAGACATGTTAAATCATGAAACATGAGCTACAAACATGTTAAAGTTTAAATGAAGTTAGGAAGATTTTTGGACAAGCTATTTTTGGACAGAAATCTTATAAATGCACAGGATTTACAGTCACATTAAGTCCATTTAAAACATCATTGCACAATGAACGTATTTATTTATACGTATACACATAAAAAGTGTTttgagtgtttaaaaaaaaaatagaaaatg

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-387 No description available

Ensembl:

ensembl_id ENSDARG00000058966

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046241 False 1209 mRNA 0.44 7 18448108 18467064
TCONS_00046242 False 654 processed_transcript 0.48 2 18453172 18456584
TCONS_00046243 True 726 lncRNA 0.37 4 18460675 18467038

Neighbor

gene id symbol gene type direction distance location
XLOC_023385 sec61g coding downstream 1504 18444189 ~ 18446604 (-)
XLOC_023382 cntnap2a coding downstream 268573 17417150 ~ 18179535 (-)
XLOC_023384 NA coding downstream 425894 18021574 ~ 18022214 (-)
XLOC_023383 CR376742.1 coding downstream 901239 17546753 ~ 17546869 (-)
XLOC_023381 NA coding downstream 1034162 17409308 ~ 17413946 (-)
XLOC_023387 si:dkey-73n8.3 coding upstream 2702 18469766 ~ 18485491 (-)
XLOC_023388 tnfrsf11a coding upstream 18802 18485866 ~ 18510631 (-)
XLOC_023389 relch coding upstream 53338 18520402 ~ 18685009 (-)
XLOC_023390 CR376786.1 coding upstream 158188 18625252 ~ 18625367 (-)
XLOC_023391 arfgef1 coding upstream 269852 18736916 ~ 18877118 (-)
XLOC_023665 dre-mir-735 misc upstream 19710897 38177961 ~ 38178027 (-)
XLOC_023380 NA non-coding downstream 1041625 17403470 ~ 17406483 (-)
XLOC_023378 NA non-coding downstream 1211908 17233526 ~ 17236200 (-)
XLOC_023393 CR384092.1 non-coding upstream 821590 19288654 ~ 19288768 (-)
XLOC_023395 NA non-coding upstream 1491852 19958916 ~ 19962882 (-)
XLOC_023397 CR381686.1 non-coding upstream 1565267 20032331 ~ 20054257 (-)
XLOC_023398 NA non-coding upstream 1593627 20060691 ~ 20063050 (-)

Expression


Co-expression Network