G410006


Basic Information

Item Value
gene id G410006
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 49176268 ~ 49214687 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU465072
tactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatctttttgtgtccaaatccggcttcaaacttcttcacaacagtatctcggacctgcctggtgtgttccttgttcttcatgatgctctctgagcttttaacggacctctgagactatcacagtgcaggtgcatttatacggagacttgattacacacaggtggattgtatttatcatcattagtcatttaggtcaacattggatcattcagagatcctcactgaacttctggagagagtttgctgcactgaaagtaaaggggctgagtaattttgcacgcccaatttttcagtttttgatttgttaaaaaagtttgaaatatgcaataaatgtcgttccacttcatgattgtgtcccac
>TU465070
tactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatctttttgtgtccaaatccggcttcaaacttcttcacaacagtatctcggacctgcctggtgtgttccttgttcttcatgatgctctctgagcttttaacggacctctgagactatcacagtgcaggtgcatttatacggagacttgattacacacaggtggattgtatttatcatcattagtcatttaggtcaacattggatcattcagagatcctcactgaacttctggagagtttgctgcactgaaagtaaaggggctgaataattttgcacgctcaatttttcagtttttgatttgttaaaaaagtttgaaatatccaataaatgtcgttccacttcatgattgtgtcccacttgttgttgattcttcacaaaaaaatacagttttatagctttatgtttgaagcctgaaatgtggcaaaaggtcgcaaagttcaaaggggccgaatactttcgcaaggcactgtatctgctgtCTGCTTTCCTGAGGTTTGTCTC
>TU465068
ctttgacttggccattctaacacctggatatgtttatttttgaaccattccattgtagattttgccttatgttttggatcattgtcttgttggaagacaaatctccgtcccagtctcaggtcttttgcagactccatcaggttttcttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgcatatacgactgattgttgtcctatggacagagtctcccacctcagctgtagatctctgcagttcatccagagtgatcatgg

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU465072 False 422 lncRNA 0.40 2 49176268 49194298
TU465070 False 564 lncRNA 0.40 2 49191901 49194298
TU465068 True 328 lncRNA 0.44 3 49212862 49214687

Neighbor

gene id symbol gene type direction distance location
notch1 notch1 coding downstream 221399 48881393 ~ 48954869 (-)
LOC110523989 LOC106560554 coding downstream 328718 48729983 ~ 48847550 (-)
mier3a LOC105008092 coding downstream 483246 48646906 ~ 48693022 (-)
pdxp plpp coding downstream 595605 48574750 ~ 48580663 (-)
pdcl pdcl coding downstream 631836 48540082 ~ 48544432 (-)
LOC110523994 rax coding upstream 443299 49657986 ~ 49663582 (-)
LOC110522869 LOC106613981 coding upstream 930291 50144978 ~ 50150252 (-)
LOC118964617 NA coding upstream 1216033 50416344 ~ 50468752 (-)
LOC110523998 LOC106613480 coding upstream 1610922 50825609 ~ 50987810 (-)
kif14 LOC106613482 coding upstream 1773202 50987889 ~ 51039285 (-)
G409924 NA non-coding downstream 122375 49053490 ~ 49053893 (-)
G409914 NA non-coding downstream 147326 49028662 ~ 49028942 (-)
G409909 NA non-coding downstream 153418 49022613 ~ 49022850 (-)
G409433 NA non-coding downstream 178159 48997899 ~ 48998109 (-)
G409424 NA non-coding downstream 184491 48991552 ~ 48991777 (-)
G410214 NA non-coding upstream 285522 49500209 ~ 49500664 (-)
G410217 NA non-coding upstream 291100 49505787 ~ 49508334 (-)
G410272 NA non-coding upstream 402152 49616839 ~ 49617041 (-)
G410336 NA non-coding upstream 519307 49733994 ~ 49734201 (-)
G410339 NA non-coding upstream 521801 49736488 ~ 49736763 (-)
G408782 sec16a other downstream 818703 48353302 ~ 48357565 (-)
G408664 NA other downstream 953048 48221952 ~ 48223220 (-)
LOC110523962 LOC106561388 other downstream 2566153 46572673 ~ 46610314 (-)
G406588 NA other downstream 2941731 46219667 ~ 46234537 (-)
LOC110523950 LOC106561514 other downstream 3152428 46019698 ~ 46023840 (-)
G410168 NA other upstream 319229 49533916 ~ 49576456 (-)
G411459 NA other upstream 1404204 50618891 ~ 50619175 (-)
G411929 NA other upstream 1507627 50722314 ~ 50723061 (-)
G411930 NA other upstream 1508472 50723159 ~ 50724077 (-)
LOC110524003 LOC106613485 other upstream 1965071 51179758 ~ 51228505 (-)

Expression


Co-expression Network