XLOC_023387 (si:dkey-73n8.3)


Basic Information

Item Value
gene id XLOC_023387
gene name si:dkey-73n8.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 18469766 ~ 18485491 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046244
TCAAGAGTAGCTATTTTCCTCCTCGCTGCATGGTTCACATGTAATAAGAGCATTGGGAAAATGAGTGTATTAAGGGGACTCATTATCAAAAGATGGTCATCTGATGTTCGCCTAGATGGAAAAACTGCTATAGTGACTGGAGCAAACACTGGGATTGGGAAAGAAACAGCGAAGGACCTTGCAAATCGGGGTGCTCGAGTGATCCTCGCCTGCAGAGACCTGGTCAAGGCTGAACAGGCGGCCAGTGACATCAGCAGAGACGTAGAGAACGCCAATGTGGTCGTTCGCAAACTAGACCTGGCTGACACGAAATCCATCTGTGAATTTGCTGAACTCATTTATAACActgaaaAGTCTCTTCATCTGCTGATTAATAATGCTGGAGTGGCAATCTGCCCTTACTCTACAACAGTAGACGGCTTTGAGACACAGTTCGGAGTCAATCATTTAGGACATTTCTTTCTAACATTCCTGCTTATTGATCTGTTGAAGCATTCAGCTCCTTCCAGAGTGATTAATGTCTCCTCACTTGTTCATCCCATGGGAAAGATCCACTTTGAGGACCTGAACAGTGAGAAAAACTATCATCCAGTGAAGGCCTACGTACAGAGCAAACTGGCCAACATACTTTTCACAAGAGAGCTTGCCTCCAGAGTGGAAGAGCTGGGAGTGAGGGTTTATGCTGTGGATCCAGGCCTGGTGAATACAGATATCACCAGACATTTGATGAAGCCTGTGCAGTTCTTCGTGAAGACATTCGGTTTCATGATAAAAACCCCTGCTGAGGGTGCATATACCACGCTTTACTGTGCTCTTACTCCAGATTTACCAACTGGATCCTACTACAGGTTTGTTTGAACTTCATCTGTACACACtgtgaaatattatgtaaaagTATGTGCTCACAACATGTATTTTTGTTAATTTCACATATTTTAAAAGCTATACAAACTGTTTTTGTTAAAGTTGAGTGATTCAACCTAAAAATGTAGGGTAACTACAAATAATCTTGATGATCATCTTTTCCATTCACATGCTCTTTCTTTTGCTCTTGTGAGGCTAAAATTGGCTCCAACCTAATGAACTGCTCTAAATTTCCTCATGCTGAGGTTTAATAAAGTAGTTCCTCTCATGATCTCTCACAGTAACTGTGCGGTGGCCTCGTGCTCAAGGGCTGCTAAGGACGACAACTCCGCCAGCAAACTGTGGGCTGTCAGCTGCCACCTGCTGGGCATTCGCTGGAGATGAGCTCCTACTGGCACTGCACAGCAGCCTTATTTCATGCTAATGCCCTTTGTAAGATGTATAATTACTCAGTTTCAGCAGCAGCCCCAGCTGAGCTCTATCTGTATTCCTGTCTTATGCTAATTTAGAATCATTTCTGGACTgttattggtcagtcagtcagtctttattcatttcccgaaggcaatttggttgcagcatacaaccatgtcacacataatacacaaaagTACATTATACAATACTAATTCTAccctaaatttaaaaactttacagctgagggaatgaatgaaagtttaaacCGATTTGTTTTACTAATAGGAGTTCTGTATCGAATACCAGAAGGGAGAAGATAAAACTCGTGGTGCATAGGATGGGAATCATCTACTCTGAGCTTTACTCAAAACTTGTCTATTGTCTAACTGAGCCATGGTCATCTGTTTTCTCCCTGTTATTTTTCCTCCTAGGTTTACAATTCTCTCCAGACAACTTATTTTTCATACTTAGAGAATTGAACCAGCATAGCAAAGAAAAAGATAACAGTGACTGAATGTATGA
>TCONS_00046245
CGCGATTCGATGCAAACTTTGTAGTCTACTCCACGTGAGGTGAGAAAGAAACTCCACCAAAGGCTGCTTGATGTTTAGCTGACGGAGTCTGGGATGCAGCAGAAACAAACACAGAGATGTTTTGTTGAATTCTGTCTGCCAAAACAGGAAGTTATGACTAGTTTTAATGTGGTTCTGCTCAAAGAGCCTTCAGGCACATTTGATGACTCGTGACTGACAACGAACGTGAAATTGTTCTGCCATCTTGTGGACGGGGACTCATTATCAAAAGATGGTCATCTGATGTTCGCCTAGATGGAAAAACTGCTATAGTGACTGGAGCAAACACTGGGATTGGGAAAGAAACAGCGAAGGACCTTGCAAATCGGGGTGCTCGAGTGATCCTCGCCTGCAGAGACCTGGTCAAGGCTGAACAGGCGGCCAGTGACATCAGCAGAGACGTAGAGAACGCCAATGTGGTCGTTCGCAAACTAGACCTGGCTGACACGAAATCCATCTGTGAATTTGCTGAACTCATTTATAACActgaaaAGTCTCTTCATCTGCTGATTAATAATGCTGGAGTGGCAATCTGCCCTTACTCTACAACAGTAGACGGCTTTGAGACACAGTTCGGAGTCAATCATTTAGGACATTTCTTTCTAACATTCCTGCTTATTGATCTGTTGAAGCATTCAGCTCCTTCCAGAGTGATTAATGTCTCCTCACTTGTTCATCCCATGGGAAAGATCCACTTTGAGGACCTGAACAGTGAGAAAAACTATCATCCAGTGAAGGCCTACGTACAGAGCAAACTGGCCAACATACTTTTCACAAGAGAGCTTGCCTCCAGAGTGGAAGAGCTGGGAGTGAGGGTTTATGCTGTGGATCCAGGCCTGGTGAATACAGATATCACCAGACATTTGATGAAGCCTGTGCAGTTCTTCGTGAAGACATTCGGTTTCATGATAAAAACCCCTGCTGAGGGTGCATATACCACGCTTTACTGTGCTCTTACTCCAGATTTACCAACTGGATCCTACTACAGTAACTGTGCGGTGGCCTCGTGCTCAAGGGCTGCTAAGGACGACAACTCCGCCAGCAAACTGTGGGCTGTCAGCTGCCACCTGCTGGGCATTCGCTGGAGATGAGCTCCTACTGGCACTGCACAGCAGCCTTATTTCATGCTAATGCCCTTTGTAAGATGTATAATTACTCAGTTTCAGCAGCAGCCCCAGCTGAGCTCTATCTGTATTCCTGTCTTATGCTAATTTAGAATCATTTCTGGACTgttattggtcagtca
>TCONS_00046246
GTCAAGAGTAGCTATTTTCCTCCTCGCTGCATGGTTCACATGTAATAAGAGCATTGGGAAAATGAGTGTATTAAGGGGACTCATTATCAAAAGATGGTCATCTGATGTTCGCCTAGATGGAAAAACTGCTATAGTGACTGGAGCAAACACTGGGATTGGGAAAGAAACAGCGAAGGACCTTGCAAATCGGGGTGCTCGAGTGATCCTCGCCTGCAGAGACCTGGTCAAGGCTGAACAGGCGGCCAGTGACATCAGCAGAGACGTAGAGAACGCCAATGTGGTCGTTCGCAAACTAGACCTGGCTGACACGAAATCCATCTGTGAATTTGCTGAACTCATTTATAACActgaaaAGTCTCTTCATCTGCTGATTAATAATGCTGGAGTGGCAATCTGCCCTTACTCTACAACAGTAGACGGCTTTGAGACACAGTTCGGAGTCAATCATTTAGGACATTTCTTTCTAACATTCCTGCTTATTGATCTGTTGAAGCATTCAGCTCCTTCCAGAGTGATTAATGTCTCCTCACTTGTTCATCCCATGGGAAAGATCCACTTTGAGGACCTGAACAGTGAGAAAAACTATCATCCAGTGAAGGCCTACGTACAGAGCAAACTGGCCAACATACTTTTCACAAGAGAGCTTGCCTCCAGAGTGGAAGAGCTGGGAGTGAGGGTTTATGCTGTGGATCCAGGCCTGGTGAATACAGATATCACCAGACATTTGATGAAGCCTGTGCAGTTCTTCGTGAAGACATTCGGTTTCATGATAAAAACCCCTGCTGAGGGTGCATATACCACGCTTTACTGTGCTCTTACTCCAGATTTACCAACTGGATCCTACTACAGTAACTGTGCGGTGGCCTCGTGCTCAAGGGCTGCTAAGGACGACAACTCCGCCAGCAAACTGTGGGCTGTCAGCTGCCACCTGCTGGGCATTCGCTGGAGATGAGCTCCTACTGGCACTGCACAGCAGCCTTATTTCATGCTAATGCCCTTTGTAAGATGTATAATTACTCAGTTTCAGCAGCAGCCCCAGCTGAGCTCTATCTGTATTCCTGTCTTATGCTAATTTAGAATCATTTCTGGACTgttattggtcagtc
>TCONS_00046247
GACGGAGTCTGGGATGCAGCAGAAACAAACACAGAGATGTTTTGTTGAATTCTGTCTGCCAAAACAGGAAGTTATGACTAGTTTTAATGTGGTTCTGCTCAAAGAGCCTTCAGGCACATTTGATGACTCGTGACTGACAACGAACGTGAAATTGTTCTGCCATCTTGTGGACGGGGACTCATTATCAAAAGATGGTCATCTGATGTTCGCCTAGATGGAAAAACTGCTATAGTGACTGGAGCAAACACTGGGATTGGGAAAGAAACAGCGAAGGACCTTGCAAATCGGGGTGCTCGAGTGATCCTCGCCTGCAGAGACCTGGTCAAGGCTGAACAGGCGGCCAGTGACATCAGCAGAGACGTAGAGAACGCCAATGTGGTCGTTCGCAAACTAGACCTGGCTGACACGAAATCCATCTGTGAATTTGCTGAACTCATTTATAACAATCCACTTTGAGGACCTGAACAGTGAGAAAAACTATCATCCAGTGAAGGCCTACGTACAGAGCAAACTGGCCAACATACTTTTCACA

Function

symbol description
si:dkey-73n8.3 Human ortholog(s) of this gene implicated in Leber congenital amaurosis 13 and Leber hereditary optic neuropathy. Orthologous to several human genes including RDH12 (retinol dehydrogenase 12).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-141219-27 Human ortholog(s) of this gene implicated in Leber congenital amaurosis 13 and Leber hereditary optic neuropathy. Orthologous to several human genes including RDH12 (retinol dehydrogenase 12).

Ensembl:

ensembl_id ENSDARG00000089205

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046244 False 1803 mRNA 0.42 6 18469766 18477672
TCONS_00046245 False 1285 processed_transcript 0.47 7 18470166 18485491
TCONS_00046246 False 1106 mRNA 0.47 7 18470167 18477673
TCONS_00046247 True 532 processed_transcript 0.46 4 18473781 18485411

Neighbor

gene id symbol gene type direction distance location
XLOC_023386 zgc:112332 coding downstream 2702 18448108 ~ 18467064 (-)
XLOC_023385 sec61g coding downstream 23162 18444189 ~ 18446604 (-)
XLOC_023382 cntnap2a coding downstream 290231 17417150 ~ 18179535 (-)
XLOC_023384 NA coding downstream 447552 18021574 ~ 18022214 (-)
XLOC_023383 CR376742.1 coding downstream 922897 17546753 ~ 17546869 (-)
XLOC_023388 tnfrsf11a coding upstream 375 18485866 ~ 18510631 (-)
XLOC_023389 relch coding upstream 34911 18520402 ~ 18685009 (-)
XLOC_023390 CR376786.1 coding upstream 139761 18625252 ~ 18625367 (-)
XLOC_023391 arfgef1 coding upstream 251425 18736916 ~ 18877118 (-)
XLOC_023392 cpa6 coding upstream 394763 18880254 ~ 18919649 (-)
XLOC_023665 dre-mir-735 misc upstream 19692470 38177961 ~ 38178027 (-)
XLOC_023381 NA non-coding downstream 1055820 17409308 ~ 17413946 (-)
XLOC_023380 NA non-coding downstream 1063283 17403470 ~ 17406483 (-)
XLOC_023378 NA non-coding downstream 1233566 17233526 ~ 17236200 (-)
XLOC_023393 CR384092.1 non-coding upstream 803163 19288654 ~ 19288768 (-)
XLOC_023395 NA non-coding upstream 1473425 19958916 ~ 19962882 (-)
XLOC_023397 CR381686.1 non-coding upstream 1546840 20032331 ~ 20054257 (-)
XLOC_023398 NA non-coding upstream 1575200 20060691 ~ 20063050 (-)

Expression


Co-expression Network