G410564


Basic Information

Item Value
gene id G410564
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 49975087 ~ 49976601 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU465649
cagtaagtattcagaccctttcctatgagactcgaaattgagctcaggtgtttctacaacttgtccatctgtggtaaattctattgattagacatgatttggaaaggcatacctgtctatttaaggtccgactgatgacagtgcatgtctgagcaaaaaccaagccatgaggttgaaagaatggtctgtagagctccaagacaggatcgtgtcgaggcacagatctggggaagggtaccaaaaaatgtctgcagcattgaagatcccaaagaacacagtggccttcattcTTAAACAaaagaagtttggatccaccagactcttccgagagctggccgtccggccatACTGAACAATCAAGGGAgaagggtcagggaggtgaccaagaagctgatgctccccatccaaccttccagaaagacaaccatctctgctgcactccaccaatcaggcctttgtggtagagtggccagacggaagccacttctcagtaaaaaggtacatgacatcccgcttggagattgcaaaaaggcacataaaggaatctcagaccatgagaaagaagattctctggtttgaggaaaccaagattgaactccttggcctgaatgccaagcgtcacatctggaggaaacctggcaccatccctagggtgaagcatgtgggtggcagcatcatgcattgaggatgtttttcagcgacagggactggaaAACTAGTCAGGAtttagggaaagatgaactgcacaaagtacagcgagatccttgatgaaaactttctccagagagctcaggacctgagactggggcgaAAGACAACGACCCTGagaacatagccaagacaacgcagggttggctttgggacaagtctctgaatgtccttgagtggcgcagtcagaacccagacttgaacctgatcgaacatctctggagagaccttaaaatagctgtgcagcgacgctccccatccaaactgacagagcttgagaggatctgcagagaagaatgttagaaactccccaaatacaggtgtgccaagcttgtagcatcatacccaagaagacatgagactgtaatcgctgccaaaggtgcttcaacaaagtactgagtaaagggtctgaatagttatgtaaatgtaaaaaaatatatatagatattttaatacatttgcaaaaaaaaaaaaaaaaaaagctttgtcattatggaatattgtgtgtatattgatgaggggggaaaactatttaatcaattttagaataaggctataacgtaacaaaatgttgaaaatgtcaaggggtctgaatactttccaaatgcactgtataagaaaataaaaataagccTTCAAACTTTTTTCTTTCAAAGCAAGTCCAACTTATTCAAACCTTTTGACCCCTTTATTTTTTTGGCTGCAACCACACAACCAAACCCTGAACCCAATGAACTGTTTGTTACATTACTCATCTTAATAAATGTCACAAATAAATGTCACAAATGTCACAAGCCTCCAGGTCAG

Function

NR:

description
PREDICTED: zinc finger protein 135-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU465649 True 1515 lncRNA 0.43 1 49975087 49976601
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110522958 LOC106560427 coding upstream 232257 49736646 ~ 49742830 (+)
LOC110523995 LOC106560436 coding upstream 242542 49694223 ~ 49732545 (+)
LOC110522957 LOC106613948 coding upstream 451634 49521853 ~ 49523453 (+)
psmd5 psmd5 coding upstream 460642 49502161 ~ 49514445 (+)
setd9 setd9 coding upstream 1333419 48609741 ~ 48641668 (+)
nr5a2 LOC106613481 coding downstream 752501 50729102 ~ 50825399 (+)
camsap2a camsap2 coding downstream 1083233 51059834 ~ 51153381 (+)
LOC110524004 LOC106613487 coding downstream 1306935 51283536 ~ 51291754 (+)
LOC118964752 NA coding downstream 1418976 51395577 ~ 51395631 (+)
LOC110524007 LOC106613489 coding downstream 1442829 51419430 ~ 51435491 (+)
G410561 NA non-coding upstream 1799 49972951 ~ 49973288 (+)
G410556 NA non-coding upstream 9161 49965481 ~ 49965926 (+)
G410343 NA non-coding upstream 234816 49740009 ~ 49740271 (+)
G409838 NA non-coding upstream 326234 49648441 ~ 49648853 (+)
G409792 NA non-coding upstream 430418 49544087 ~ 49544669 (+)
G410593 NA non-coding downstream 30311 50006912 ~ 50007139 (+)
G410598 NA non-coding downstream 38208 50014809 ~ 50015087 (+)
G410599 NA non-coding downstream 39693 50016294 ~ 50016552 (+)
G410600 NA non-coding downstream 43224 50019825 ~ 50020066 (+)
G410496 NA non-coding downstream 98851 50075452 ~ 50077843 (+)
LOC110523996 hcn1 other upstream 51489 49889400 ~ 50073258 (+)
G409191 NA other upstream 993316 48948138 ~ 48981771 (+)
LOC110523980 LOC106560682 other upstream 1811200 48149869 ~ 48221948 (+)
G408222 NA other upstream 1935994 48036626 ~ 48039093 (+)
G411519 NA other downstream 686271 50662872 ~ 50663640 (+)
G412859 NA other downstream 1825649 51802250 ~ 51802820 (+)
G414007 NA other downstream 2784788 52761389 ~ 52761729 (+)
G414041 NA other downstream 2801916 52778517 ~ 52779479 (+)

Expression

G410564 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 3.
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G410564 Expression in each Bioproject

Bar chart with 19 bars.
G410564 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 60.
End of interactive chart.

Co-expression Network