G410747


Basic Information

Item Value
gene id G410747
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 49978651 ~ 49978862 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU465839
CTTCTCTTGGTACTGCCTGCGGGACGAGTCCAGTGATTGGATGAGAGCGGTGGCGTGGCCGACGAACATGGCGTAGCAGGTGGCGCCCACAATCATACTGAGCATGGTGATCCACAGGTCGGACATGCTGACAGGCGCCCGGGCGCCGTACCCGATACACAGCATGTGGCTCATGGCCTTAAAGAGAGCGTACGAGTACTGCTTACCCCACG

Function

NR:

description
hypothetical protein Z043_103642, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU465839 True 212 lncRNA 0.60 1 49978651 49978862

Neighbor

gene id symbol gene type direction distance location
LOC110523994 rax coding downstream 315069 49657986 ~ 49663582 (-)
col27a1a LOC106560409 coding downstream 607663 49088535 ~ 49370988 (-)
notch1 notch1 coding downstream 1023782 48881393 ~ 48954869 (-)
LOC110523989 LOC106560554 coding downstream 1131101 48729983 ~ 48847550 (-)
mier3a LOC105008092 coding downstream 1285629 48646906 ~ 48693022 (-)
LOC110522869 LOC106613981 coding upstream 166116 50144978 ~ 50150252 (-)
LOC118964617 NA coding upstream 451858 50416344 ~ 50468752 (-)
LOC110523998 LOC106613480 coding upstream 846747 50825609 ~ 50987810 (-)
kif14 LOC106613482 coding upstream 1009027 50987889 ~ 51039285 (-)
LOC110524002 rubcn coding upstream 1173418 51152280 ~ 51174432 (-)
G410707 NA non-coding downstream 56096 49917300 ~ 49922555 (-)
G410658 NA non-coding downstream 125915 49850004 ~ 49852736 (-)
G410339 NA non-coding downstream 241888 49736488 ~ 49736763 (-)
G410336 NA non-coding downstream 244450 49733994 ~ 49734201 (-)
G410272 NA non-coding downstream 361610 49616839 ~ 49617041 (-)
G410750 NA non-coding upstream 2233 49981095 ~ 49981302 (-)
G410759 NA non-coding upstream 14403 49993265 ~ 49993503 (-)
G410762 NA non-coding upstream 18683 49997545 ~ 49997895 (-)
G410773 NA non-coding upstream 33995 50012857 ~ 50013060 (-)
G410777 LOC106586052 non-coding upstream 39072 50017934 ~ 50018255 (-)
G410168 NA other downstream 402195 49533916 ~ 49576456 (-)
G408782 sec16a other downstream 1621086 48353302 ~ 48357565 (-)
G408664 NA other downstream 1755431 48221952 ~ 48223220 (-)
LOC110523962 LOC106561388 other downstream 3368536 46572673 ~ 46610314 (-)
G406588 NA other downstream 3744114 46219667 ~ 46234537 (-)
G411459 NA other upstream 640029 50618891 ~ 50619175 (-)
G411929 NA other upstream 743452 50722314 ~ 50723061 (-)
G411930 NA other upstream 744297 50723159 ~ 50724077 (-)
LOC110524003 LOC106613485 other upstream 1200896 51179758 ~ 51228505 (-)
G412372 NA other upstream 1394603 51373465 ~ 51377130 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G320223 NA non-coding NC_047615.1 CM018561.1 14052750 ~ 14052949 (-)