G410779 (LOC106568517)


Basic Information

Item Value
gene id G410779
gene name LOC106568517
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 50021449 ~ 50021950 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU465871
CCCCATCCAGATGAACGTAATGTAATATGAGAAGCTAACtccagtcccaaaatgttttatcTGCAGTGATGGGACTTCACAAACATCAAAGCAAAGGCAAAAGAGGATTTGAGTGGATGGAGTGAGTCTGAATACGCCTACACAGTGGTCCTTGACACAGTTCCCTTTTCCCGTATTATAGCTTGGTGTCTGTCTAAGCGAAAATTGGTACCATAGAAAACATGCAGGATGtctttgtttttctgttttcTCTACGTACCTCCAAAGTAGGAGCCGTCAGTCAGCTTCATCTCTTTGTTGAGCTTGGTGATAACACTGGCCACACCATGTTGGATGAAGTACATCTTCTTGCCCACGGTACCCTCTCTGATGATGTAATCGTTGGGTTGGAACACCTCGAACTTCAGCTTGCTCAACATGCCCGTCACGAAGTTGGGGTCTGCGTTGGCGAACAGTGGCATGGTAGCCACAAGCTTCCGGCAGTTGAAGTTCACAATTtcct

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU465871 True 502 lncRNA 0.46 1 50021449 50021950

Neighbor

gene id symbol gene type direction distance location
LOC110523994 rax coding downstream 357867 49657986 ~ 49663582 (-)
col27a1a LOC106560409 coding downstream 650461 49088535 ~ 49370988 (-)
notch1 notch1 coding downstream 1066580 48881393 ~ 48954869 (-)
LOC110523989 LOC106560554 coding downstream 1173899 48729983 ~ 48847550 (-)
mier3a LOC105008092 coding downstream 1328427 48646906 ~ 48693022 (-)
LOC110522869 LOC106613981 coding upstream 123028 50144978 ~ 50150252 (-)
LOC118964617 NA coding upstream 408770 50416344 ~ 50468752 (-)
LOC110523998 LOC106613480 coding upstream 803659 50825609 ~ 50987810 (-)
kif14 LOC106613482 coding upstream 965939 50987889 ~ 51039285 (-)
LOC110524002 rubcn coding upstream 1130330 51152280 ~ 51174432 (-)
G410777 LOC106586052 non-coding downstream 3194 50017934 ~ 50018255 (-)
G410773 NA non-coding downstream 8389 50012857 ~ 50013060 (-)
G410762 NA non-coding downstream 23554 49997545 ~ 49997895 (-)
G410759 NA non-coding downstream 27946 49993265 ~ 49993503 (-)
G410750 NA non-coding downstream 40147 49981095 ~ 49981302 (-)
G410809 NA non-coding upstream 87981 50109931 ~ 50110240 (-)
G410884 NA non-coding upstream 163569 50185519 ~ 50185719 (-)
G410896 NA non-coding upstream 172198 50194148 ~ 50194376 (-)
G410963 NA non-coding upstream 221721 50243671 ~ 50244020 (-)
G411046 NA non-coding upstream 263098 50285048 ~ 50286664 (-)
G410168 NA other downstream 444993 49533916 ~ 49576456 (-)
G408782 sec16a other downstream 1663884 48353302 ~ 48357565 (-)
G408664 NA other downstream 1798229 48221952 ~ 48223220 (-)
LOC110523962 LOC106561388 other downstream 3411334 46572673 ~ 46610314 (-)
G406588 NA other downstream 3786912 46219667 ~ 46234537 (-)
G411459 NA other upstream 596941 50618891 ~ 50619175 (-)
G411929 NA other upstream 700364 50722314 ~ 50723061 (-)
G411930 NA other upstream 701209 50723159 ~ 50724077 (-)
LOC110524003 LOC106613485 other upstream 1157808 51179758 ~ 51228505 (-)
G412372 NA other upstream 1351515 51373465 ~ 51377130 (-)

Expression


Co-expression Network