XLOC_023392 (cpa6)


Basic Information

Item Value
gene id XLOC_023392
gene name cpa6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 18880254 ~ 18919649 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046260
CCCAACCCCTCTGACACCCCGCACCACGTGACCACACTtccaaaaacactttaaaagacTCGGGATACTACCAGAATTCCCACatgagtgctttcacacctctaCCTCAAGGAATCATCCCGGGATCCGACAAACAGTGCAGAATAGCCTCGAAGTGTAATGATTTCCATTCAGCATCCAAAAGCACCGCGCAGCCTCTGACTGTCTGCTGCAGAATCGCCGCTTTTATCCATATTCTAACGTAATATGGCACTGAGAAGCACAGACGTGTCTAGTAACGTTAAGTCTGCTGTTTTACTCGGATGTGTTTTAATTCTCTGCACCGCGCCCAATAATGTGGACTCTTACCTCTATAACAACCGCTACGTCGGTGATCAAGTGTTCAGAATAATCCCCAGCAGTAAACCAGAGGTTCAAGCAGTCAAACAGCTTTTCCAAAACTTGACAGTGGACCTTTGGCAGCCCAACAGTGCATCTTTGATTCGAGAAAACAGCTCAATCGACGTTCATGTGAGACGGGACAAGACGCATTGGCTGAGAAATCATCTTCACCAAGAACACATCTACTACGAGGTGCTCATTTCCAATCTCCAAACTGAAATTGAGAAACAGACGGGGTACCGGTCCTCTAGGAAGCGCAGATCTGAACTTCAGTATGACTATGAAGTGTACCATCCTTTAGAAGAGTTAGGAAAGAGAACACGTTTCTTTAAGAAGGCGGTGTGGATAGACTGTGGAGTACATGCAAGAGAATGGATCGGTCCAGCTTTCTGCCAGTGGTTTGTTAAAGAGGCACTGAACTCCTATCAACACGACTCCAGCATGAGACGACTGATGAATCAGCTCAATTTCTACATTATGCCTGTCTTCAACGTGGATGGTTACCATTACAGCTGGAAGATGGATCGCTTTTGGCGGAAAACTCGGTCAAAGATACCAAAGTATCATTGTCGAGGAGTGGATGCCAATCGAAATTGGAAAGTCAAATGGTGTGATGAGGGTGCATCCCTACACCCCTGTGATGACACGTACTGCGGACCGTTCCCCGAGTCGGAGCCAGAGGTCAAAGCTGTTGCCAAATTTCTTCGTAAACACAAGAAACGGGTGAAGGCCTACATCTCAATGCATGCCTACGCTCAGATGCTCCTCTATCCATATTCCTACAAATACGCCACTATACCAAACTTCAACTGTGTgGAATCAGCAGCCCAGAACGCAGTGAGCGCTCTGTATTCGGCTTATGGCGTGAGATACAGATATGGCCCTGCCTCCTCCACGCTTTATGTGAGTTCTGGAAGCTCGATGGACTGGGCTTATAAGAACGGGATCCCATATGCCTTTGCTTTTGAGTTGCGCGACACAGGATACTATGGATTCCTGTTGCCAGAAGCCCTGATTAATCCAACCTGCACAGAGACCATGAGAGCTGTCAAAACCATCGCTTCAGGCCTGCTCAGAAAATGCACCAAATAAAACTTTCTACATGACTTtcagggtgtgttcacacttgtagtTTGGTTAAAATGGTTCAGTTTGTGTTCAAACTGTCTTTGAACCtaaaacaaacaactaaagaaatgtttttttgatGTACAGTTGGAGATGAAATGATTAGCCTtgctgtaaaatgttatttattaatttttgtaagaCCTTTTGtgcaaaaatcatttttataatgGGTTTCAAAAGTTGTGgtgcaacagtctgtgaatataagcagcttctaatggtaaaaaatgattagttaaattttttatgatcacacttcataaaaagtctgcagaaacactttgattgacattcagcCTTTGTACATGTTGTCAGAGGGAGTAAGCCTCGCCCATCTCGacgtttgtagctccaccctcttttgaaaagagggctgggaacacaatcttatttgaatttaaagcggcagtcaccaaaatggcaccaTTAGCATCAAAAAGGGATTGtgttaaagagttataaaaatatCTATGCGGCACACTCTAGGCACATCAaggacttattttacatcttgaaaAAAGTGGCATAATAGGGTCTCTTTATAACTGCTAAGGTTGATACTATTAGCCtcttaacaaattattatttttcagattGACTACTGTTGTTTAATGACATTACttgttagttatttaaactattgtttttttaaatgtgttggcaatcacttggaaaatatttggaaaaatattacaatttcaaagtagagctaataattctgtgtTCAACTGTATTTCATGTATATTGAGAATAATCAAACATTCAAAACAATGCTCAATGTGCGCCTTGCATGTAATTATTGGTTGATTAAAAAACTAATTAAGAGCTTCTAAAAGTGTGTAAAGACAACCAAACTGCCAGTAGATGCGTTTATGATAACTCTCCTCAACTGTATTTGCAATATTGCAACTAtgaacagacaaaaaaaacagATATGCTTGAGCATTTTGTCCTTTTTGAGTCACATCTTCTGATCTGTTTGTCTGATTCATATTTAAATAGAACCATTTGGAGCTTGTAAATTATCTGAATCGGATCTTTTCAGCAACCCCCATCTGCTTGTTTAATGCACACTAAGGTTTGAATGGCAGCGTTCACACCTGAAGCTTTCTAACAGAGCATTAACAATATGAGTTCATCCAAGAATTTAAAATTACTCCATattcactcaccctcaagtggttccaagtgtcttttttttctgtacaacactaaagaagatatttagaaatatcttgaaaaactgtaaccatcgcatccattctaaataaataatattaagccAATAGTAACTGTTTTctgaaattcttcaaaatatcttcttttgtgttcaacagaagaaagaaactcaaacaggtttgtgacaagtgaagggtgagtgaatgatgacagaattttgagTTTTGGGCAACCTACTTCTTTAAGTCGACTACAGAGTTTTTAGGTCCAAATACTTTATAAGATCCCAAAAGCGAACAACAAAAGGTACTAAATAAATTATGCTCACAGTGTCATAATAGTATCATAATTTCTGGACAGACAGAGATTCATctgttataaattataaatatcagTGTCTGTAACACAGAAAGTCTAGACTCAGCAGACatacaacgtcataagacgttaaaattagattagatttaggtggccagtgtctaaggataatgttattttgacgtccaataatgacgtgaaatgacgttgataatttgttgactttaggttgtgttaggtaatcttaattattttatgttcaatccatttaaatttgtaaaaacaaataaattaacttaattcctacatgttgtcccaacaccaaGCATTGACTTTGTGAAAGACTGGCTTTAATGTGCGATATGAATAAACAGAGTTTataagagagtttttttttttttttttttcaaaattttaataGAGACTTATAGTAGagacttggacccggaagcagAACACCATTTCACAGCTTAACAGTATTgcagtattgtttttaaatcaaatataaaggaaaaagtgtgaacacaccctccCTCTCATTTATCTCGATTTTTACTTCACAAGCCATACAAATGTCTTCAAGCTAAAACTAaaggtttatttttataaactacATAAATCAAGCTCTAAATGAAACAATGCAAATGTAAACTGCAAATTAATGCAAGCACTTGAAATGTGAACAAAATGATGTTTTTTATGAGGCCAAAATAAAGTGAGCACTTGCAAGTTTCAGAAGAACAGTGATGccaatataatgtaaatattgcATACTGTGGTCTTACAGTGGGTTTATTCTGGTGTGGATGCCATGTGTTTCACTTCAGCTAAAATTAAAAGGGAAAAATGCTTTGAAACTAAATGGTGAAAGGTCAACAGGGATCTCAACCTCTCAAATGAGCTAGAAAGGAATACTCAAAGTTGTTGTTTTGGTTGAAAGAAAAGCTTGTCAGAGTGACTTAACTTGTATGAATATATGTTGCAAGTGCAATGTTTACATGTGTACTATCAAGTTTTATTTGCAATAAgctaatatttatttcaaaagaaACATACAGTACATTGTTCTATATATTTCGACTTGCAAGTTGTAATTTGTTATCTTTGTACACAGACCTTTGTATCTTactgtttattttaccaaaatgttGTTTAGTAAAAGTACTTTTATAGCAATATGTTGTAAAGTGGTTTTATGATAATATAATGCTGCACATGAATACAGTTGCCAACATGCTGCATACAAACTTACACAGAGGTTATGATTTGTTGCATGTGGATGACATAAGGTTTAGTGTCCAAATATGATTAAGTTGCAAATTTAGGAATTAACACAATATTGATATACTgtgtgttgcaaaaaaaaaaacttatactgtatatgatagtaaacaaaacataaataaaaacattatcaaccctgtaaaaactgcaaaaaaagtgatATTGTGAAAACAGTGATGTCTAAAGTCATGGAATAGTGCCATACAACTTACtgttagcactgttgccagcAAGTTACCGCAACTGCCCATTTACTGTAACTTACCTgtgaatgtgttttacagtagcagggccctaccacaattttttatttttttttacagtaaatagtCTTACTGCAACTTCTTTTTATGGTAAAATACCCTTTAATGCATCTTAATTTTACAATTTGACTAATTTTAAACTAGTTTTACTgtaattcatttacattttacacttgCAGTATAAAACCTGTATTTTTAGCGTTTACTATGGAATTTAGTAAAATCCATACAACTATTTTTTCATCATGTCTTGTCTTCAACTACAGCAGCAGTGTTTGGTTACTTtgattacagtaaaatacagcaaattcgtaatatgcagtaagttacagtaaacattttaaaatgacccaCAATGAAGTGCATATCACAGTCTGTAAAGAATGTATGTGGTATTATACTGGccgtttttgcagtaaataactgtaaaactaCGGGAAAGTCTCACAGAGTACACTACAGTGCTGCATTGTAGACATGTAACATGTCCCACTTCTGACCTCAATGTGTTCCAGTCAGTCAGATGTCACCATCTCATATTCACCATGTGAGAATATTTCAATACATACTATTTTTTGGTAATTATGCTAAATACttcaaaattaatataaaaagctgtCCATAgctttgaaaaaaaacaacaaatatggTGACATTTAATTTTGCGCTAAGCTATTGTCATTAAAAATGGCC
>TCONS_00046261
CCCACatgagtgctttcacacctctaCCTCAAGGAATCATCCCGGGATCCGACAAACAGTGCAGAATAGCCTCGAAGTGTAATGATTTCCATTCAGCATCCAAAAGCACCGCGCAGCCTCTGACTGTCTGCTGCAGAATCGCCGCTTTTATCCATATTCTAACGTAATATGGCACTGAGAAGCACAGACGTGTCTAGTAACGTTAAGTCTGCTGTTTTACTCGGATGTGTTTTAATTCTCTGCACCGCGCCCAATAATGTGGACTCTTACCTCTATAACAACCGCTACGTCGGTGATCAAGTGTTCAGAATAATCCCCAGCAGTAAACCAGAGGTTCAAGCAGTCAAACAGCTTTTCCAAAACTTGACAGTGGACCTTTGGCAGCCCAACAGTGCATCTTTGATTCGAGAAAACAGCTCAATCGACGTTCATGTGAGACGGGACAAGACGCATTGGCTGAGAAATCATCTTCACCAAGAACACATCTACTACGAGGTGCTCATTTCCAATCTCCAAACTGAAATTGAGAAACAGACGGGGTACCGGTCCTCTAGGAAGCGCAGATCTGAACTTCAGTATGACTATGAAGTGTACCATCCTTTAGAAGAGATTCAGAGTTGGATGTTTGAGATGAACCGAACTCATTCCCACCTGGTTGATCTGTTTTCTATTGGTCAATCCTATGAAGGACGACCACTCTATGTGCTCCAGTTAGGAAAGAGAACACGTTTCTTTAAGAAGGCGGTGTGGATAGACTGTGGAGTACATGCAAGAGAATGGATCGGTCCAGCTTTCTGCCAGTGGTTTGTTAAAGAGGCACTGAACTCCTATCAACACGACTCCAGCATGAGACGACTGATGAATCAGCTCAATTTCTACATTATGCCTGTCTTCAACGTGGATGGTTACCATTACAGCTGGAAGATGGATCGCTTTTGGCGGAAAACTCGGTCAAAGATACCAAAGTATCATTGTCGAGGAGTGGATGCCAATCGAAATTGGAAAGTCAAATGGTGTGATGAGGGTGCATCCCTACACCCCTGTGATGACACGTACTGCGGACCGTTCCCCGAGTCGGAGCCAGAGGTCAAAGCTGTTGCCAAATTTCTTCGTAAACACAAGAAACGGGTGAAGGCCTACATCTCAATGCATGCCTACGCTCAGATGCTCCTCTATCCATATTCCTACAAATACGCCACTATACCAAACTTCAACTGTGTgGAATCAGCAGCCCAGAACGCAGTGAGCGCTCTGTATTCGGCTTATGGCGTGAGATACAGATATGGCCCTGCCTCCTCCACGCTTTATGTGAGTTCTGGAAGCTCGATGGACTGGGCTTATAAGAACGGGATCCCATATGCCTTTGCTTTTGAGTTGCGCGACACAGGATACTATGGATTCCTGTTGCCAGAAGCCCTGATTAATCCAACCTGCACAGAGACCATGAGAGCTGTCAAAACCATCGCTTCAGGCCTGCTCAGAAAATGCACCAAATAAAACTTTCTACATGACTTtcagggtgtgttcacacttgtagtTTGGTTAAAATGGTTCAGTTTGTGTTCAAACTGTCTTTGAACCtaaaacaaacaactaaagaaatgtttttttgatGTACAGTTGGAGATGAAATGATTAGCCTtgctgtaaaatgttatttattaatttttgtaagaCCTTTTGtgcaaaaatcatttttataatgGGTTTCAAAAGTTGTGgtgcaacagtctgtgaatataagcagcttctaatggtaaaaaatgattagttaaattttttatgatcacacttcataaaaagtctgcagaaacactttgattgacattcagcCTTTGTACATGTTGTCAGAGGGAGTAAGCCTCGCCCATCTCGacgtttgtagctccaccctcttt
>TCONS_00046262
gtgctttcacacctctaCCTCAAGGAATCATCCCGGGATCCGACAAACAGTGCAGAATAGCCTCGAAGTGTAATGATTTCCATTCAGCATCCAAAAGCACCGCGCAGCCTCTGACTGTCTGCTGCAGAATCGCCGCTTTTATCCATATTCTAACGTAATATGGCACTGAGAAGCACAGACGTGTCTAGTAACGTTAAGTCTGCTGTTTTACTCGGATGTGTTTTAATTCTCTGCACCGCGCCCAATAATGTGGACTCTTACCTCTATAACAACCGCTACGTCGGTGATCAAGTGTTCAGAATAATCCCCAGCAGTAAACCAGAGGTTCAAGCAGTCAAACAGCTTTTCCAAAACTTGACAGTGGACCTTTGGCAGCCCAACAGTGCATCTTTGATTCGAGAAAACAGCTCAATCGACGTTCATGTGAGACGGGACAAGACGCATTGGCTGAGAAATCATCTTCACCAAGAACACATCTACTACGAGGTGCTCATTTCCAATCTCCAAACTGAAATTGAGAAACAGACGGGGTACCGGTCCTCTAGGAAGCGCAGATCTGAACTTCAGTATGACTATGAAGTGTACCATCCTTTAGAAGAGTTAGGAAAGAGAACACGTTTCTTTAAGAAGGCGGTGTGGATAGACTGTGGAGTACATGCAAGAGAATGGATCGGTCCAGCTTTCTG
>TCONS_00046263
ttcacacctctaCCTCAAGGAATCATCCCGGGATCCGACAAACAGTGCAGAATAGCCTCGAAGTGTAATGATTTCCATTCAGCATCCAAAAGCACCGCGCAGCCTCTGACTGTCTGCTGCAGAATCGCCGCTTTTATCCATATTCTAACGTAATATGGCACTGAGAAGCACAGACGTGTCTAGTAACGTTAAGTCTGCTGTTTTACTCGGATGTGTTTTAATTCTCTGCACCGCGCCCAATAATGTGGACTCTTACCTCTATAACAACCGCTACGTCGGTGATCAAGTGTTCAGAATAATCCCCAGCAGTAAACCAGAGGTTCAAGCAGTCAAACAGCTTTTCCAAAACTTGACAgtcaggtgattggctgggccattctacagcttgattttctttctctgaaagcatttgagcagggatgcccaaactcggtccaggaaggccagtgtcctgcaaattgtagttctaaccccaatcaaacacacctgggctagctattCAAGCTCATACTAGGCTTACAAGAAATATCCAtgcaggtatgttgaggcaagttggagcttaaatctgcaggacactgacaCCCCTGCATTTAAGTgcttccttggctgtgttttgaatcattgtcttgctgaaatgtccaccctggtttcatcatcATTATCCTGATAATccagatgttggactaaagcagctgatATAAATTTTCAATGGCGAAGGGCATAGGGTTGCTGAATAATGCTGAGaggt

Function

symbol description
cpa6 Enables carboxypeptidase activity. Predicted to be involved in proteolysis. Predicted to be active in extracellular space. Is expressed in several structures, including head; pectoral fin; pectoral fin bud; segmental plate; and tail bud. Human ortholog(s) of this gene implicated in familial febrile seizures 11 and familial temporal lobe epilepsy 5. Orthologous to human CPA6 (carboxypeptidase A6).

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005615 extracellular space cellular_component
GO:0004180 carboxypeptidase activity molecular_function
GO:0004181 metallocarboxypeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
ko01002 Peptidases and inhibitors

ZFIN:

id description
ZDB-GENE-091204-331 Enables carboxypeptidase activity. Predicted to be involved in proteolysis. Predicted to be active in extracellular space. Is expressed in several structures, including head; pectoral fin; pectoral fin bud; segmental plate; and tail bud. Human ortholog(s) of this gene implicated in familial febrile seizures 11 and familial temporal lobe epilepsy 5. Orthologous to human CPA6 (carboxypeptidase A6).

Ensembl:

ensembl_id ENSDARG00000012013

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046260 False 5249 mRNA 0.36 10 18880254 18919649
TCONS_00046261 False 1898 mRNA 0.44 11 18883629 18919571
TCONS_00046262 False 686 mRNA 0.46 5 18895547 18919562
TCONS_00046263 True 748 processed_transcript 0.45 3 18910017 18919557

Neighbor

gene id symbol gene type direction distance location
XLOC_023391 arfgef1 coding downstream 3136 18736916 ~ 18877118 (-)
XLOC_023389 relch coding downstream 195245 18520402 ~ 18685009 (-)
XLOC_023390 CR376786.1 coding downstream 254887 18625252 ~ 18625367 (-)
XLOC_023388 tnfrsf11a coding downstream 369623 18485866 ~ 18510631 (-)
XLOC_023387 si:dkey-73n8.3 coding downstream 394763 18469766 ~ 18485491 (-)
XLOC_023393 CR384092.1 coding upstream 369005 19288654 ~ 19288768 (-)
XLOC_023394 csrnp1b coding upstream 787960 19707609 ~ 19719240 (-)
XLOC_023395 NA coding upstream 1039267 19958916 ~ 19962882 (-)
XLOC_023396 slc22a13b coding upstream 1087062 20006711 ~ 20016817 (-)
XLOC_023397 CR381686.1 coding upstream 1112682 20032331 ~ 20054257 (-)
XLOC_023665 dre-mir-735 misc upstream 19258312 38177961 ~ 38178027 (-)
XLOC_023384 NA non-coding downstream 858040 18021574 ~ 18022214 (-)
XLOC_023383 CR376742.1 non-coding downstream 1333385 17546753 ~ 17546869 (-)
XLOC_023381 NA non-coding downstream 1466308 17409308 ~ 17413946 (-)
XLOC_023380 NA non-coding downstream 1473771 17403470 ~ 17406483 (-)
XLOC_023398 NA non-coding upstream 1141042 20060691 ~ 20063050 (-)
XLOC_023400 NA non-coding upstream 1262348 20181997 ~ 20185025 (-)

Expression


Co-expression Network