G412487


Basic Information

Item Value
gene id G412487
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 51528026 ~ 51570866 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU467690
AAAAACAGCAAATCTCAGCAGTCTACACCCATAAtgacccataatgacaaagcgaaaaaaaagaaggaaaaaaatgttttgcagatgtattcaaaataaacagatataccttatttacatacgtattcagaccctttgctacgcgactcgaaattgagctcatgtgcatcctgtttccattgatcatccttaatgtttctataacttggaatccacctgtggtaaattcaattgattggacatgatttgaaaaagcacacacctttctatataagatcccacagttgacagtacatgtcagagcaaaaacctagccatgaggtcgaaggaattgtctgtaaagctcagagacaggattgtCACAGACATACGGGAAGTGAAACATTGGCAGTCCGCTCATCTTTGGGAAACCGGGTGGAGAGAAGGCAGGCTCATAGTGTGACTAAACATTTCCTCCCGTCAGTTGGGGAGTACAGGGTGTTATAGAGTCCTGTGTTGTTTGAGGTTAGGTATACCCCTGAAACCCACAATTTGGCCCATGTAACTAGCTCAGTCTATAATCAGAACAGGCTTTCGATAGTCCATTATTTAAGGGAGGCATCTACAATCTCATTAGTTGTGTATTCCAAGATGGTGAATGATGATAGCAACTGTACCTCAAAAAGAATAGAGACCGGATTCACATGAGTAAAGATTTAGGAACTTTCACTCTCAATAAAAGGCTATTATGAAGACATCCATGACTCAATATCTGGGCCAAAAACATACTGGTAATATTACTGACAATCCATTTCATTAATGGGAATTGACAGCTACAAAAAATTAATGAGTAGCACTGGACTCTTCCACTAGTTTTTATGGATAAAAATTTAAGTACCAATACTTTTATCCCCAGAGTTCCATATCATGCAGAAAAACTGCCCATTATTATCATTTCCCAAAAGCTTAACATTCCCTCCATAATAAACATGCATTTCAGTCGTTCCACAAAAAGAGtgccttttgcatccctttgatattttaagtataaACTGTGCtccaatattgcattttaaaaagcctgttatattacaTGAAGTGTCCATTAAAATTTAGAACTCAATAAAtcaaaattcagcattttgacatttCCCTCCGTGTACCCTCTGACTTctaaaaaatcggaaaaaaaaaatcggaaaaaaaaaatcggaaaacaaAACccgaaaaaaaatccgaaaaaaaaaactagaaaaaaaatctgaaaacaaacccgaaaaaaaaatcgggaaaaaaaatctgaaaaaattagggaaaaaaaaaacgaaaaaaaaataaaaataaaaaaatcgggaaaaaaaacccgaaaaaaaatcgggaaaaaaaatcggaaaaaaaaaaagaaaaaaaatccgaaaaaaaaaatcggaaaaaaaaatcaaaaaaataaacctgaaaaaaaatcgaaaaaaaatcggaaaaaaacccccgaaaaaaaaacggaaaaaaaatccgaaaaagaAATCGGGGAAAAAAACCCGAaagaaaatcgggaaaaaaatcgggaaaaaaaaccagaaaaaaaatcaggaaaaaaaatcggcaaaaaaaacCGGAAAAAAAAAACcggaaaaaaatcagaaaaaaaaacccgaaaaaaaatcgggaaaaaaaatcggaaaaaaaacgaaaaaaattcagaaaaaaaaatgaaaaaaaaaacccgaaaaaaaatctgaaaaaaaaaacggaaaaaaaatcggaaaagaAAAACCAGAAAAACAACCCGAAAAGAAATcagaaaaaaaatcgggaaaaaaaataggaaaaaaaaccccgaaaaaaaatcagaaaaaaaaatagagaaaaaaaatcagaaaaaaacaaacgggaaaaaaaatcggaaaaaaaaccccgaaaaaaaatcggaaaaaaaatcggaaaaaaaaacccgaaaaaaaatcggaaaaaaaaacagaaaaataatcAGAAAAAAACAATCGggaaaaaaaattggaaaaaaaaacccgaaaaaaaatcggaaaaaaatcggaaaaaaaacccgaaaaaaatcagaaaaaaaaaatccggaaaaaaaatcggggaaaaaaacccgaaaaaaaatcgggaaaaaaaattgggaaaaaaaatcggaaaaaatcgaaaaaaatcggaaaaaaatcagaaaaaaaatcagaaaagaAATCGGGGAAAAAAAaccgaaaaaaaatcgggaaaaaaatccgaaaaaaaatttccgaaaaaaaaaacgaaaaaaaaaaatccgaaaaaaaatcggaaaaaaaaaaacggaaaaaaaatcggaaaagattttctctagattttttttctagattttttttctagatgttTTTCTAGATGTTttcctagatttttttctagattttctttc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU467690 True 2392 lncRNA 0.31 6 51528026 51570866

Neighbor

gene id symbol gene type direction distance location
LOC110524007 LOC106613489 coding upstream 92535 51419430 ~ 51435491 (+)
LOC118964752 NA coding upstream 132395 51395577 ~ 51395631 (+)
LOC110524004 LOC106613487 coding upstream 236272 51283536 ~ 51291754 (+)
camsap2a camsap2 coding upstream 389642 51059834 ~ 51153381 (+)
nr5a2 LOC106613481 coding upstream 703085 50729102 ~ 50825399 (+)
LOC110524009 LOC106613493 coding downstream 122034 51692900 ~ 51709944 (+)
LOC110524010 LOC106613494 coding downstream 442701 52013567 ~ 52031827 (+)
LOC110524011 LOC106613497 coding downstream 535702 52106568 ~ 52109717 (+)
LOC110524014 gnb4 coding downstream 576298 52147164 ~ 52168561 (+)
plaat1 LOC106613501 coding downstream 651962 52222828 ~ 52230021 (+)
G412440 NA non-coding upstream 114242 51412090 ~ 51413784 (+)
G412354 NA non-coding upstream 143118 51384487 ~ 51384908 (+)
G412303 NA non-coding upstream 256881 51270300 ~ 51271145 (+)
G412297 NA non-coding upstream 262494 51265303 ~ 51265532 (+)
G412523 NA non-coding downstream 31681 51602547 ~ 51606479 (+)
G412486 NA non-coding downstream 42459 51613325 ~ 51616299 (+)
G412485 NA non-coding downstream 47161 51618027 ~ 51618451 (+)
G412636 NA non-coding downstream 49492 51620358 ~ 51620630 (+)
G412786 NA non-coding downstream 165261 51736127 ~ 51736403 (+)
G411519 NA other upstream 864386 50662872 ~ 50663640 (+)
LOC110523996 hcn1 other upstream 1604428 49889400 ~ 50073258 (+)
G409191 NA other upstream 2546255 48948138 ~ 48981771 (+)
setd9 setd9 other upstream 2886411 48609741 ~ 48641668 (+)
G412859 NA other downstream 231384 51802250 ~ 51802820 (+)
G414007 NA other downstream 1190523 52761389 ~ 52761729 (+)
G414041 NA other downstream 1207651 52778517 ~ 52779479 (+)
G414488 LOC106562530 other downstream 1541317 53112183 ~ 53112507 (+)
G415582 LOC106584099 other downstream 2607063 54177929 ~ 54183430 (+)

Expression


Co-expression Network