G412616


Basic Information

Item Value
gene id G412616
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 51554888 ~ 51609162 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU467829
aaaaatgtactgtgtaacatgtcatattactgtcatctgatgaagattttcaaaaggttagtgagcgatttattttttaatcctgcgtttgttgattgcatgttttggctattcaaatgagctgtgtctggtggtggttttacatatatatgtgctatgttttcgccgtaaaacattttagaaatctgacttgctgtctagatgaacaaggtgtttatctttcatttgagctattggacttgttaatgtgtggaggttaaatatttttaagaatatttttgcgttccatgcgccgccgtttcagctgaacgtgggagggtaggttcccagctgggaaccaatatcgtagacaggttaaattaAGGCAATAATAATCACTCACATCGCATTTTTAAAGCATGACAGAAGTTATATTGAAGAAAACGGTACGTGGACAGTCGTATTCAATCAAGTATCCTTGTTACAGGTCCAATCTATGGTCATTGACTGAATCTACATAGTGAGAAATTGCCAAACACATTTGAAATGGAGGAACAATATCCAGTAGCCTACATTACATCAAGTCCAAAGAGCAACATGCTGTCACCTAGGCTGCTTTTCAAACGCAACTGTTAGCCCTCAGTATATTCCACTCATTCAGAGAATAATTTCTAAATGCAGCACTCTTGAGGCCACCAGAGGTATTTGCACAAGTTGTTTCCTTACCCTGTCAGACTCACACTGCAAACTCTAGCCTTTAAGGCCTTTCCAGACAGTACGATTTTACTCATCTTATGTCATGATTTTGTCGCCCCCGACAAAGTTTCCAAGTCGTGGGCAAATTCTTAGGTCGTAAACGATTGTCGGACATCTTGGCTCGTAGGGTCTGCCAATTAAGTACCACTACGTGCGGTCGTAGGCTCAGCTGGTGTTACGAGCCGATCCACGGTGACAGACCAATAGGAACACAGCCAGCACTAATGATTAATATAATTGTTATATTTAAACATGTACATGCTGTGCATGCGTTTTCCCTAATAATCTTGTTTacctgaaatcaggctacctgatgggatTTTGATAAATGCACGCAATCGGCAGAAAATCggcaatcaaaataaacgttATACCACAGCGTCCGTTTTATTTTTGGAAAgcctatttgattctgagtttggACATTTAAAGTTGGCATACTTCTAGTTTTTCCCGAACTCATTTCACTCGCAGAGAAGCAGTGTGCTGGTTCACGTGCAGATTAAATACACCGATGCAGTTGATGTAGCCTACGTCTACTGACGTGGCCAATTTGGTAGCACAGTTTGAATAATAATGTGATATAATCGTCAAAAACTGAATCCGACATACTTAGACAAAACTTTTCAGGAACAGCGCTATTCATCACAATCATTAAAATCACTTTTTTAACTGATACTCAATCTCCTcagtgcacactcacacacactggctaGTCACAGAGGACTACTTGGTACATGAGACCACCATTGACATATATCAGACAACCTGCTCAACATGGCTGACTGGATACACAGTGTAGTCTCTGTATTCTCTCTCAGCTGATATCCATCCCCTTTGGCCAGGGTACAGTAGTACTCAGGGGAGTCTTATATGGACTTCTAGGAGCAGTCTGATGCGTCAATAATGATGAGGTCTGATAAAAGTGCTTTTTGTCCTGTTTAATGACCCATCTGGCCCGGGGGCATTGCCAAGGGCACAGACTACAAGAGCGGGGAGATGAAGGATGAAAGAGGGGtacatttcattcattcattattttCCAACAATACTCgagtgagctctctctctctcgagtgAGCACTGTTCTATATTGACATTCTCAGTTAACTTTTTTTTTACGCTCCAATAAGTTTAAGGTAATTATATAATTAGCATGTGGTAAAATGCTGTAAATATGGATACTTTTCTATACTTACTGCCCTCTACCATCTTGATATCCCTTATCTAAACTTAAATTCGCACCCTAAATAGTGTCAGCTAACATTAAGGACAGACAATTGTTGTCAAAGGTCAGACAAAGAACAGGATTCCCAGTGGGGGAAAATGTTCAATTTTGACAGGCATCATACTGTAACCAGGTAGactaaaaatcaaatcaaagcttAATAATTAAAACCGGTGTATAAAATACCACACAATACAAAAAAACTCATACAAGGACGCAAGCACAGAAGCCACAGCACTCAACCCAGTGTTGTTTTACATTACCGCTTCAGAGAATCTCTCTCAACCTTACTCCCTATTCTGCTTAATACTGTTATGATATAGAAATGTATGTACAATACATAATTTACAACAATTTGTATGCTAAATATGGATCCAATTGTTGTTTTAAAATAGATTCTTTCTGAACTCAATTTCACAAAAGTAAAATTCATACGTAAAATTTGCCAAGATTGATACTTAATTGTAACGATAAAAATGTCAAACAAGACAAGGTCTTTTACACAGGAGTTTAAGACTCACTGTGGGAAACATACAAGCATGTAACACACTGAAATATTGCATAAGCATATCAGGAATACGCATATAAATATTCCCTAAAGTAAAATCACTAATAATCACACCTGGTGCATGGCAAGACACTGTTAGCTactcaacagtctgatggtcaaAAGTCAGGATTATTGCCTGATGTGACTGCTATTTGATAGTCATGACAACCTCTGTTGCAAGTTCTCTTTGAAAAGACATTGCAACTAATAAAGACATGGCTGTTTGAAAGTTGGAACGCATCATCAGACAACAACAGCCACGACTTCAAAGGAAGCAGCGAGTCTTCAGCTGTTCAGTAGTTAAAACACTGGCTCTACGGCTAATGGCTTTGACCCCGGTCAAGTAAATAAAAGTCTAGCACCTTTCTGCAGACACAAGATGCAGCTTAGCTTACCACCTGGCTGACCGGAGTCTTCATAGAGGTATTGAACAACAATACAGGACATCAAATGTCTGCTTATTAAACATATGATGCTACTCCTGTCTGTCTATTGGGGCTCTACTGTCTCTAGGGTTAATCCAGCTGCAGGTTAATAAACTCCTGCATGCACTTCCTGTATTGCATCTCGGTGGGGCTGTAGGTGGAATATTGACCTGACTGCATGTAGGGCCCCTCCGCCTCCCG

Function

NR:

description
arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU467829 True 3139 lncRNA 0.40 2 51554888 51609162

Neighbor

gene id symbol gene type direction distance location
LOC110524005 LOC106613488 coding downstream 172137 51296717 ~ 51382751 (-)
LOC110524003 LOC106613485 coding downstream 329071 51179758 ~ 51228505 (-)
LOC110524002 rubcn coding downstream 380456 51152280 ~ 51174432 (-)
kif14 LOC106613482 coding downstream 515603 50987889 ~ 51039285 (-)
LOC110523998 LOC106613480 coding downstream 567078 50825609 ~ 50987810 (-)
LOC110522962 LOC106613492 coding upstream 24135 51633297 ~ 51768111 (-)
LOC110522967 LOC106613496 coding upstream 431246 52040408 ~ 52101949 (-)
LOC110524012 NA coding upstream 493086 52102248 ~ 52107624 (-)
actl6a acl6b coding upstream 522840 52132002 ~ 52146396 (-)
LOC110524016 LOC100380721 coding upstream 562892 52172054 ~ 52199848 (-)
G412563 NA non-coding downstream 28136 51469541 ~ 51526752 (-)
G412445 NA non-coding downstream 137392 51417137 ~ 51417496 (-)
G412435 NA non-coding downstream 144773 51409680 ~ 51410115 (-)
G412433 NA non-coding downstream 145345 51409303 ~ 51409543 (-)
G412432 NA non-coding downstream 147434 51407172 ~ 51407454 (-)
G412630 NA non-coding upstream 3567 51612729 ~ 51616333 (-)
G412632 NA non-coding upstream 7240 51616402 ~ 51616797 (-)
G412633 NA non-coding upstream 7670 51616832 ~ 51617123 (-)
G412637 NA non-coding upstream 11224 51620386 ~ 51620676 (-)
G412706 NA non-coding upstream 18034 51627196 ~ 51670347 (-)
G412372 NA other downstream 177758 51373465 ~ 51377130 (-)
G411930 NA other downstream 830811 50723159 ~ 50724077 (-)
G411929 NA other downstream 831827 50722314 ~ 50723061 (-)
G411459 NA other downstream 935713 50618891 ~ 50619175 (-)
G415256 LOC106613513 other upstream 2008521 53617683 ~ 53618864 (-)
G415420 NA other upstream 2281598 53890760 ~ 53892906 (-)
G415464 nexn other upstream 2394569 54002448 ~ 54005673 (-)
G416110 NA other upstream 2754124 54363286 ~ 54392411 (-)
LOC110524071 LOC106613554 other upstream 3532153 55123617 ~ 55181458 (-)

Expression


Co-expression Network