XLOC_023398


Basic Information

Item Value
gene id XLOC_023398
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 20060691 ~ 20063050 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046275
ACCAGAAGATCATGATCGACTTCACGGAGATTCTCTCGGCCGTCGGCGAATTTGGGGCGTTTCAGAAGCGCTTGTTGGTGGCGGTGTGTATCCCTAACATTTTCAATGCCTTCCACATGTTCGGCCAGGTGTTCAGCGCCATCAGCTTCCCGCACTACTGCAACAGCGgatagaagtaaagttggttttatattcgcacattccgaCCTCTGCGTTCAATAAGTTTGTAAATCAGCAAGTAAAGAATCCATATTCAATTATTTACCGTTGTAGTCGATTATGAGCAAAATGTACACCACACTTTTCTGTCAAACTCGGCGTTTTAAAGGAGTAGAAAAACACGCTTACCTCTATGAAGGAGGTGACGTCATCGCTTTTTTGAGGGACCGTCTACAAACTATCAGTTTGTAAAATCAAGCTGCTAACGTTCACTGTCTATAATTGTACGCAAGCAAAAGATGGCCAGATTGAGACTTGTGAACTTCACCACTGGCTCCCTCCTTTAAAATGTTACTCTGCTGAAGtacatgtgaataaaaaaaatattttcaagacaGCAAATAACAGTGTCATGAAATGAGTTCGGCTCATGTGGACGAAAAGAGTCCAAAATGAGAATCTATGCATTTGGGGATTTACAATGCTATTATTCActttggaatgtttttttttttacttgcatgtACTTGcacaatatttttatacataattgCCACACATTACATAGTAATGTAATAAGTTGTACTTTCATTACATATTAAGTGAGATTCTTGCCAATGTTTGTTTCATGTCCCATGTGTCAATATAGAGCTGCAATAGGAAGACCAGCAGAccttttgtgatttgtgtttgtaATCAATGAAATTGCATGATAAAATGATGAAATAGGAGATGTAATGGATTTATTCTTAAATTATCATTGTGTATGaagtgtgctttttaaataaacttgttttgAAATGCaagaaaaatactataaaaatatgcTTATAAATATTCTTATAAATTCATATACAAGATATGTTTATGAAAAGctacttgtgagtgatagataaTATAACTATTGATGTCTGATATTAATTTATTGATCCTACA
>TCONS_00046274
CTTATGTAAAGCAGAATTATTTCCAATATAACACCGTTCATTATGATTACtaatagggcgacgcagtggcgcagtaggtagtgctgtcacctcacagcaagaaggtcgctgggtcgagcctcggccggatcagctggcgtttctgtgtggagtttgcatgttctccctgcgtttgcgtgggtttccttcagatgcaccggtttcccccacagtccaaagatatgcggtaaaGTTATATTAATATATCGGTATATTAATTCGTTTTCAAATATCTGTTACGTTGAATGACAATGGGACATTATTGTtctgatgttttgagtttttagttTCACAagagttatttgaaacatttgcattaaatattCTTGATTCAATATTCAACCAGAAGTTGATATTTAATAATCACTAATAGTTAtccataataatagtaataaacgTTTTTCAAACTATTGATATTCCTTTGCCcacatttttgtgtgtttaaaactCATTGTGAACCGTTTAGTAACTGAATCTAATCCTAATGTGCCTTTTTcctattttcttcttttttttgctacatttttgtttcttgtttttccaATTAGTCACGTAACTACAGTACATAGTATAAATATTGTGTTTGGCCTCGCAAACATCTTCATTACCACACTATTAAGACCGCCTTCATTGGCAAAAAAAGAAAGGCCTGTATTGGGttcatcattcacacacacacacacacacacacacaatgtaaatAAACACTGCAGACATTCCTCGTTACATTCAATCGTTAGAAACAGCCTCACTCCAAATACATACATTGGATAGGATGAAACATTGTGTAATATTCAAATagaaaaatacttttatattGTCCTTCCTGCAGTTTCTTTTAACGTTTTATCTTACCTGCTCGCCTGCGCAGATAATGCCAGACACTATTGGACCTGTGACaagattaaaaattaattttcctCCGTTTAAAAGCGCGCCGTCGCTTCTGATGGTCACCAGAAGATCATGATCGACTTCACGGAGATTCTCTCGGCCGTCGGCGAATTTGGGGCGTTTCAGAAGCGCTTGTTGGTGGCGATTGTACGCAAGCAAAAGATGGCCAGATTGAGACTTGTGAACTTCACCACTGGCTCCCTCCTTTAAAATGTTACTCTGCTGAAGtacatgtgaataaaaaaaatattttcaagacaGCAAATAACAGTGTCATGAAATGAGTTCGGCTCATGTGGACGAAAAGAGTCCAAAATGAGAATCTATGCATTTGGGGATTTACAATGCTATTATTCActttggaatgtttttttttttacttgcatgtACTTGcacaatatttttatacataattgCCACACATTACATAGTAATGTAATAAGTTGTACTTTCATTACATATTAAGTGAGATTCTTGCCAATGTTTGTTTCATGTCCCATGTGTCAATATAGAGCTGCAATAGGAAGACCAGCAGAccttttgtgatttgtgtttgtaATCAATGAAATTGCATGATAAAATGATGAAATAGGAGATGTAATGGATTTATTCTTAAATTATCATTGTGTATGaagtgtgctttttaaataaacttgttttgAAATGCaagaaaaatactataaaaatatgcTTATAAATATTCTTATAAATTCATATACAAGATATGTTTATGAAAAGctacttgtgagtgatagataaTATAACTATTGATGTCTGATATTAATTTATTGATCCTACA

Function

GO:

id name namespace
GO:0045995 regulation of embryonic development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043009 chordate embryonic development biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0003146 heart jogging biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:1903225 negative regulation of endodermal cell differentiation biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0007369 gastrulation biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0060562 epithelial tube morphogenesis biological_process
GO:0042664 negative regulation of endodermal cell fate specification biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko03070 Bacterial secretion system
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046275 False 1095 lncRNA 0.36 2 20060691 20062056
TCONS_00046274 True 1732 lncRNA 0.35 2 20060691 20063050

Neighbor

gene id symbol gene type direction distance location
XLOC_023397 CR381686.1 coding downstream 6434 20032331 ~ 20054257 (-)
XLOC_023396 slc22a13b coding downstream 43874 20006711 ~ 20016817 (-)
XLOC_023395 NA coding downstream 97809 19958916 ~ 19962882 (-)
XLOC_023394 csrnp1b coding downstream 341451 19707609 ~ 19719240 (-)
XLOC_023393 CR384092.1 coding downstream 771923 19288654 ~ 19288768 (-)
XLOC_023399 oxsr1b coding upstream 1038 20064088 ~ 20152965 (-)
XLOC_023400 NA coding upstream 118947 20181997 ~ 20185025 (-)
XLOC_023401 BX247944.1 coding upstream 124266 20187316 ~ 20187430 (-)
XLOC_023402 myd88 coding upstream 125864 20188914 ~ 20192996 (-)
XLOC_023403 cry-dash coding upstream 130972 20194022 ~ 20208474 (-)
XLOC_023665 dre-mir-735 misc upstream 18114911 38177961 ~ 38178027 (-)
XLOC_023390 CR376786.1 non-coding downstream 1435324 18625252 ~ 18625367 (-)
XLOC_023384 NA non-coding downstream 2038477 18021574 ~ 18022214 (-)
XLOC_023407 NA non-coding upstream 386977 20450027 ~ 20531813 (-)
XLOC_023437 AL627129.1 non-coding upstream 1900002 21963052 ~ 21963168 (-)
XLOC_023442 NA non-coding upstream 1990759 22053809 ~ 22066831 (-)

Expression


Co-expression Network