G412861


Basic Information

Item Value
gene id G412861
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 51804579 ~ 51817658 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU468097
aaattattcagcccccttaagttaatactttgtagcgtcacctatTGCTGCgaatacagctgtaagtcgcttggggtatgtctctatcagttttgcacatcgagagactgacattttttcccattcctccttgcaaaacagctcgagctcagtgaggttggaaggagagcatttgtgaacagcagttttcagttctttccacagattctcgattggattcaggtctggactttgacttggccattctaacacctggatatgtttatttttgaaccattccattgtagattttgctttatgttttggatcattgtcttgttggaagacaaatctctgtcccagtctcaggtcttttgcagactccatcaggttttcttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgctgatgaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtggggatggtgtgttcagagtgatgagctgtgttgcttttacgccaaacataacgttttgcattgttgccaaaaagttcaattttggtttcatctgaacagagc

Function

NR:

description
Tc1-like transporase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU468097 True 598 lncRNA 0.43 2 51804579 51817658

Neighbor

gene id symbol gene type direction distance location
LOC110524009 LOC106613493 coding upstream 94635 51692900 ~ 51709944 (+)
LOC110522961 LOC106613490 coding upstream 244086 51436948 ~ 51612163 (+)
LOC110524007 LOC106613489 coding upstream 369088 51419430 ~ 51435491 (+)
LOC118964752 NA coding upstream 408948 51395577 ~ 51395631 (+)
LOC110524004 LOC106613487 coding upstream 512825 51283536 ~ 51291754 (+)
LOC110524010 LOC106613494 coding downstream 195909 52013567 ~ 52031827 (+)
LOC110524011 LOC106613497 coding downstream 288910 52106568 ~ 52109717 (+)
LOC110524014 gnb4 coding downstream 329506 52147164 ~ 52168561 (+)
plaat1 LOC106613501 coding downstream 405170 52222828 ~ 52230021 (+)
LOC110524017 ftsj3 coding downstream 412437 52230095 ~ 52235296 (+)
G412833 LOC107579696 non-coding upstream 20946 51782633 ~ 51783633 (+)
G412786 NA non-coding upstream 68176 51736127 ~ 51736403 (+)
G412636 NA non-coding upstream 183949 51620358 ~ 51620630 (+)
G412485 NA non-coding upstream 186128 51618027 ~ 51618451 (+)
G412486 NA non-coding upstream 188280 51613325 ~ 51616299 (+)
G412888 NA non-coding downstream 10461 51828119 ~ 51828462 (+)
G412892 NA non-coding downstream 20802 51838460 ~ 51838764 (+)
G412907 NA non-coding downstream 40205 51857863 ~ 51858086 (+)
G412914 NA non-coding downstream 48235 51865893 ~ 51866114 (+)
G412913 NA non-coding downstream 58781 51876439 ~ 51876732 (+)
G412859 NA other upstream 1759 51802250 ~ 51802820 (+)
camsap2a camsap2 other upstream 666195 51059834 ~ 51153381 (+)
G411519 NA other upstream 1140939 50662872 ~ 50663640 (+)
LOC110523996 hcn1 other upstream 1880981 49889400 ~ 50073258 (+)
G409191 NA other upstream 2822808 48948138 ~ 48981771 (+)
G414007 NA other downstream 943731 52761389 ~ 52761729 (+)
G414041 NA other downstream 960859 52778517 ~ 52779479 (+)
G414488 LOC106562530 other downstream 1294525 53112183 ~ 53112507 (+)
G415582 LOC106584099 other downstream 2360271 54177929 ~ 54183430 (+)
G415808 NA other downstream 2511537 54329195 ~ 54329780 (+)

Expression


Co-expression Network