G413040


Basic Information

Item Value
gene id G413040
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 51906856 ~ 51914142 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU468284
atatacgactgattgttgtcctatggacagagtctcccacctcagctgtagatctctgcagttcatccagagtgatcatgggcctcttggctgcatctctgatcagtcttctccttgtatgagctgaaagtttagagggacggccaggtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatctttttgtatccaaatccggctttaaacttcttcacaacagtatctcggacctgcctggtgtgttccttgttcttcatgatgctctctgcgcttttaacggacctctgagactatcacagtgcaggtgcatttatactgagacttgattacacacaggtggattgtatttatcatcattagtcatttaggtcaacattggatcattcagagatcctcactgaacttctggagagagcttgctgcactgaaagtaaaggggctgaataattttgcacgcccaatttttcagtttttgatttgttaaaaaagtttgaaatatccaataaatgtcgttccacttcatgattgtgtcccacttgttgttgattcttcacaaaaaaatacagttttatatctttatatttgaagcctgaaatgttccaaaaggtcacaaagttcaagggggccgaatactttcgcaaggcactgtatatacagtaccggtcaaaagtttggacacacaatgtagcgttgcacactcttggcattctctcaaccagattcacctggaatgcttttccagcagtcttgaaggagttcccacatatgctgagcatttgttggctgatttttcttcactctgcggtccaactcatcccaaaccatctcaattgggttgatgccgggtgattgtggaggccaggtcatctgatgcggcactccatcactctccttcttggtcaaatagcccttacacaacctggagg
>TU468285
atatacgactgattgttgtcctatggacagagtctcccacctcagctgtagatctctgcagttcatccagagtgatcatgggcctcttggctgcatctctgatcagtcttctccttgtatgagctgaaagtttagagggacggccaggtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatctttttgtatccaaatccggctttaaacttcttcacaacagtatctcggacctgcctggtgtgttccttgttcttcatgatgctctctgcgcttttaacggacctctgagactatcacagtgcaggtgcatttatactgagacttgattacacacaggtggattgtatttatcatcattagtcatttaggtcaacattggatcattcagagatcctcactgaacttctggagagagcttgctgcactgaaagtaaaggggctgaataattttgcacgcccaatttttcagtttttgatttgttaaaaaagtttgaaatatccaataaatgtcgttccacttcatgattgtgtcccacttgttgttgattcttcacaaaaaaatacagttttatatctttatatttgaagcctgaaatgttccaaaaggtcacaaagttcaagggggccgaatactttcgcaaggcactgtatatacagtaccggtcaaaagtttggacacacaatgtagcgttgcacactcttggcattctctcaaccagattcacctggaatgcttttccagcagtcttgaaggagttcccacatatgctgagcatttgttggctgatttttcttcactctgcggtccaactcatcccaaaccatctcaattgggttgatgccgggtgattgtggaggccaggtcatctgatgcggcactccatcactctccttcttggtcaaatagcccttacacaacctggagg

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU468284 False 985 lncRNA 0.43 2 51906856 51914142
TU468285 True 985 lncRNA 0.43 2 51906856 51914142

Neighbor

gene id symbol gene type direction distance location
LOC110522962 LOC106613492 coding downstream 138745 51633297 ~ 51768111 (-)
LOC110524005 LOC106613488 coding downstream 524105 51296717 ~ 51382751 (-)
LOC110524003 LOC106613485 coding downstream 681039 51179758 ~ 51228505 (-)
LOC110524002 rubcn coding downstream 732424 51152280 ~ 51174432 (-)
kif14 LOC106613482 coding downstream 867571 50987889 ~ 51039285 (-)
LOC110522967 LOC106613496 coding upstream 126266 52040408 ~ 52101949 (-)
LOC110524012 NA coding upstream 188106 52102248 ~ 52107624 (-)
actl6a acl6b coding upstream 217860 52132002 ~ 52146396 (-)
LOC110524016 LOC100380721 coding upstream 257912 52172054 ~ 52199848 (-)
LOC110524019 LOC106613502 coding upstream 350379 52264521 ~ 52286710 (-)
G413019 NA non-coding downstream 28167 51878287 ~ 51878689 (-)
G413017 NA non-coding downstream 30132 51875906 ~ 51876724 (-)
G413004 NA non-coding downstream 47300 51859336 ~ 51859556 (-)
G412887 NA non-coding downstream 79323 51827300 ~ 51827533 (-)
G412774 NA non-coding downstream 179209 51727354 ~ 51727647 (-)
G413097 NA non-coding upstream 82589 51996731 ~ 51996941 (-)
G413112 NA non-coding upstream 91338 52005480 ~ 52007033 (-)
G413623 LOC106613497 non-coding upstream 194616 52108758 ~ 52109812 (-)
G413678 NA non-coding upstream 313335 52227477 ~ 52291779 (-)
G412613 NA other downstream 294294 51558378 ~ 51612562 (-)
G412372 NA other downstream 529726 51373465 ~ 51377130 (-)
G411930 NA other downstream 1182779 50723159 ~ 50724077 (-)
G411929 NA other downstream 1183795 50722314 ~ 50723061 (-)
G415256 LOC106613513 other upstream 1703541 53617683 ~ 53618864 (-)
G415420 NA other upstream 1976618 53890760 ~ 53892906 (-)
G415464 nexn other upstream 2089589 54002448 ~ 54005673 (-)
G416110 NA other upstream 2449144 54363286 ~ 54392411 (-)
LOC110524071 LOC106613554 other upstream 3227173 55123617 ~ 55181458 (-)

Expression


Co-expression Network