G413377


Basic Information

Item Value
gene id G413377
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 52438790 ~ 52439079 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU468651
TCGTACCTTGTGCAGGGAGAAGGTGCGGACGCAGAAGGTGGCCAGCTCTATGGTGTCCAGTAGAGTCACCTGGGTCATCCCATAGGTCTCTGTTCCTCGACTGGGCCAGTACTGGTCACACTTgatctgaggagagaggagacgaggtGGGTAAGTGCACAGACACTCCCAAACACGCAACAAAGGCAAACTATGGCATTCATTCACAAATATACACTcacaccCAAATGCAAAAAACGCACGCTCCACACACAAATCACAC

Function

NR:

description
PREDICTED: receptor-type tyrosine-protein phosphatase S isoform X15

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU468651 True 262 lncRNA 0.52 2 52438790 52439079

Neighbor

gene id symbol gene type direction distance location
LOC110524018 LOC105026225 coding upstream 175734 52254713 ~ 52263056 (+)
LOC118964618 NA coding upstream 189895 52246773 ~ 52248895 (+)
LOC110524017 ftsj3 coding upstream 203494 52230095 ~ 52235296 (+)
plaat1 LOC106613501 coding upstream 208769 52222828 ~ 52230021 (+)
LOC110524014 gnb4 coding upstream 270229 52147164 ~ 52168561 (+)
LOC118964714 NA coding downstream 436641 52875720 ~ 52896117 (+)
opa1 LOC106613511 coding downstream 964690 53403769 ~ 53462256 (+)
LOC110524030 LOC106613513 coding downstream 1177448 53616527 ~ 53618565 (+)
LOC110524032 LOC106613514 coding downstream 1327691 53766770 ~ 53801558 (+)
LOC110524034 LOC106613518 coding downstream 1388876 53827955 ~ 53923888 (+)
G413358 NA non-coding upstream 36386 52402197 ~ 52402404 (+)
G413342 NA non-coding upstream 61702 52376686 ~ 52377088 (+)
G413206 NA non-coding upstream 300797 52136525 ~ 52137993 (+)
G413202 acl6b non-coding upstream 304944 52132019 ~ 52133846 (+)
G413163 NA non-coding upstream 319340 52076296 ~ 52119450 (+)
G413919 NA non-coding downstream 264397 52703476 ~ 52703698 (+)
G413959 NA non-coding downstream 292076 52731155 ~ 52731519 (+)
G413969 NA non-coding downstream 297633 52736712 ~ 52738078 (+)
G414089 NA non-coding downstream 373167 52812246 ~ 52812492 (+)
G414095 NA non-coding downstream 375932 52815011 ~ 52815225 (+)
G412859 NA other upstream 635970 51802250 ~ 51802820 (+)
camsap2a camsap2 other upstream 1300406 51059834 ~ 51153381 (+)
G411519 NA other upstream 1775150 50662872 ~ 50663640 (+)
LOC110523996 hcn1 other upstream 2515192 49889400 ~ 50073258 (+)
G409191 NA other upstream 3457019 48948138 ~ 48981771 (+)
G414007 NA other downstream 322310 52761389 ~ 52761729 (+)
G414041 NA other downstream 339438 52778517 ~ 52779479 (+)
G414488 LOC106562530 other downstream 673104 53112183 ~ 53112507 (+)
G415582 LOC106584099 other downstream 1738850 54177929 ~ 54183430 (+)
G415808 NA other downstream 1890116 54329195 ~ 54329780 (+)

Expression


Co-expression Network