G415256 (LOC106613513)


Basic Information

Item Value
gene id G415256
gene name LOC106613513
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 53617683 ~ 53618864 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU470637
GATTATGCACAACTCAATATCAAATATGACTTTTGCGCAAAAAATATTGGTAGAATATGATAGCCAAGTGTATCTTCGCTACacagctcaaaacaaaagtgaagaATTATGTAGGCCATTATTTGGTGGTCAGGTTTCTGTTGACAAAATCATAGCAGATGTTTTTCAATATCTTTACAAATTTATTTGTCTTCCAAAACGAAGAATTACGTTAAGGGCATTCAACATATCTTTGGCATCACACAGTACAAAAGACACCTCGAATATAAAATGCAGTGAAAAGACTTCAACAATACAAATCTCATTCCAATATGAACTTAACTCCCTCATAAGCTATACAAATATAGTGCATCTTTTCATCTTAACGCATTGAAAGTACAAAaacaaaatcaaaacaaatgttttgtAACATTGAACAAGGATCGAACTGAGTGTCATTAGAAAAGTATTTtcaatatgtattttttatttattttttatctaccAGGGTCGCCACACTGAGTCCGAGTTGCCTGTCGGTGCACCGGGGGACACTGCCGCTGGAACAGGCGTGTTGACCTGGTTCGCATACACCGGGATAACCGGACCGTTGGGTGCAAAAGCTGCGTTGGGGATGAGGAAGGCGAATTGTCCGTCTGTGGCAGGTACGAGCTGGAAACCGCCGTATACTTTAGTGGCTTCTGGTGACATGCTCTGGGGAGAGCCACCTTTACAAGGCAGGGGCATCACGTTGCCTTGCGGAGATGAGTTGGGCATCTGTACCATGGACTGGCCGAAGGAGGGGTGGGGAGGCCCGGCTGAAATCTGGTGCTGTGTGGGGTAGTTCATCGCGTTGATCTGCGTCATGCAACTGGCCAAGTGACCGAGAAGCCGCGTCCTGACCTCGGTGTTAACCCCCTCGCAGGTGGATAGGAACCGGGTGACTTCATTCGTGCACTCGCTGAATCCAGCTCTGTATTTCCCCAGCACGGTGGGATCAGTGTTCAACGCAGctttgggagaaagagagacaattaTAAACCACTGAGAGTATCGAGAAAAA
>TU470639
GCAACATAAGACTAAATTGTGATCCATTCCTGGAGCAACAAGTGGCTGTGTTTAGTTTACAATTGGTTGAATGTGCATGGGTTTTGCGCGCAGCAGAACATAAACGATTATGCACAACTCAATATCAAATATGACTTTTGCGCAAAAAATATTGGTAGAATATGATAGCCAAGTGTATCTTCGCTACacagctcaaaacaaaagtgaagaATTATGTAGGCCATTATTTGGTGGTCAGGTTTCTGTTGACAAAATCATAGCAGATGTTTTTCAATATCTTTACAAATTTATTTGTCTTCCAAAACGAAGAATTACGTTAAGGGCATTCAACATATCTTTGGCATCACACAGTACAAAAGACACCTCGAATATAAAATGCAGTGAAAAGACTTCAACAATACAAATCTCATTCCAATATGAACTTAACTCCCTCATAAGCTATACAAATATAGTGCATCTTTTCATCTTAACGCATTGAAAGTACAAAaacaaaatcaaaacaaatgttttgtAACATTGAACAAGGATCGAACTGAGTGTCATTAGAAAAGTATTTtcaatatgtattttttatttattttttatctaccAGGGTCGCCACACTGAGTCCGAGTTGCCTGTCGGTGCACCGGGGGACACTGCCGCTGGAACAGGCGTGTTGACCTGGTTCGCATACACCGGGATAACCGGACCGTTGGGTGCAAAAGCTGCGTTGGGGATGAGGAAGGCGAATTGTCCGTCTGTGGCAGGTACGAGCTGGAAACCGCCGTATACTTTAGTGGCTTCTGGTGACATGCTCTGGGGAGAGCCACCTTTACAAGGCAGGGGCATCACGTTGCCTTGCGGAGATGAGTTGGGCATCTGTACCATGGACTGGCCGAAGGAGGGGTGGGGAGGCCCGGCTGAAATCTGGTGCTGTGTGGGGTAGTTCATCGCGTTGATCTGCGTCATGCAACTGGCCAAGTGACCGAGAAGCCGCGTCCTGACCTCGGTGTTAACCCCCTCGCAGGTGGATAGGAACCGGGTGACTTCATTCGTGCACTCGCTGAATCCAGCTCTGTATTTCCCCAGCACGGTGGGATCAGTGTTCAA

Function

NR:

description
PREDICTED: transcription factor HES-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU470637 False 1042 TUCP 0.45 2 53617683 53618759
TU470639 True 1092 TUCP 0.45 2 53617738 53618864

Neighbor

gene id symbol gene type direction distance location
LOC110524026 LOC106613510 coding downstream 241084 53334333 ~ 53376599 (-)
LOC118964771 NA coding downstream 272466 53345080 ~ 53345217 (-)
kdm4b LOC101448002 coding downstream 283748 53246145 ~ 53333935 (-)
ptprsa LOC106613507 coding downstream 929637 52404727 ~ 52688046 (-)
LOC110524020 LOC106613504 coding downstream 1244282 52351810 ~ 52373401 (-)
LOC110522968 LOC106613459 coding upstream 104526 53723390 ~ 53734904 (-)
LOC118964619 LOC106613459 coding upstream 121780 53740644 ~ 53745563 (-)
LOC110524031 LOC106613515 coding upstream 127994 53746858 ~ 53750268 (-)
ccdc181 ccdc181 coding upstream 303943 53922807 ~ 53928736 (-)
prrg1 LOC106613522 coding upstream 322079 53940943 ~ 53945602 (-)
G415245 NA non-coding downstream 21875 53595596 ~ 53595808 (-)
G415027 NA non-coding downstream 36673 53580796 ~ 53581010 (-)
G415024 NA non-coding downstream 38322 53576345 ~ 53579361 (-)
G415014 NA non-coding downstream 48467 53568928 ~ 53569216 (-)
G414978 NA non-coding downstream 72443 53545007 ~ 53545240 (-)
G415274 NA non-coding upstream 52272 53671136 ~ 53671350 (-)
G415278 NA non-coding upstream 70698 53689562 ~ 53689771 (-)
G415280 NA non-coding upstream 80419 53699283 ~ 53699659 (-)
G415282 NA non-coding upstream 84020 53702884 ~ 53703142 (-)
G415291 NA non-coding upstream 93869 53712733 ~ 53713033 (-)
G412613 NA other downstream 2005121 51558378 ~ 51612562 (-)
G412372 NA other downstream 2240553 51373465 ~ 51377130 (-)
LOC110524003 LOC106613485 other downstream 2432908 51179758 ~ 51228505 (-)
G411930 NA other downstream 2893606 50723159 ~ 50724077 (-)
G411929 NA other downstream 2894622 50722314 ~ 50723061 (-)
G415420 NA other upstream 271896 53890760 ~ 53892906 (-)
G415464 nexn other upstream 384867 54002448 ~ 54005673 (-)
G416110 NA other upstream 744422 54363286 ~ 54392411 (-)
LOC110524071 LOC106613554 other upstream 1522451 55123617 ~ 55181458 (-)
G417527 NA other upstream 1989971 55608835 ~ 55609730 (-)

Expression


Co-expression Network