XLOC_023410 (vipr1b)


Basic Information

Item Value
gene id XLOC_023410
gene name vipr1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 20708174 ~ 20808283 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046301
GATTCTCTCATTGGTCGCTGAACTGTCAGCAGCTCGAGCCGCGATATGAGCCACTCACCCGGAGGACAGTTCACTCACGGCTCTAGTGATGCTCACACATATAAACTTGCTATGTTTTACTCGTCTGCCAGCGCCGCGTCCGATAACATTTGACTGAGGTTGCTTTTACGCGCTTGTAAAGCAGGATAAACTTTATGGACTTTTAAGTTTCTACAcgataaacaaaaaattaacaaagaAAACGCAACGATGGACGCCTCAAAAGTGGTTTTATTGGCTTCAGCGTTTGGCTTCGTGTTTTCTCCGGTTGCCGCTGTTCAGATGTGTGACGTGGTAAATGAGATTGAGCTGGCAAGAGCGAGGTGTGAGAATAAAACAGCAGGAAATGTCACATCAGGCTGCAAAGGGATGTGGGATATTATTGCTTGCTGGCCATCAGCCAAAATTGGGGAACACGTGGTTATTCCCTGTCCAAATTACTTCAGACACTTCTCTGATCAACATGAGGGTAACCTCTCTAAAACCTGCACTGCTGATGGCTGGACCGAAATGGACTCGTTGGAAATCGCAGTAAATTGTGGATATAATCTGAATGGCACTGTTGACGATGATAGCTTTTTTAGGTCAGTGAAGATCGGCTACACCATCGGCCACAGTGTTTCTCTCATTTCTCTCACAACTGCCATTGCAATACTCTGTATATTCAGGAAACTCCACTGCACTCGCAACTACATCCACATGCACCTGTTCGTGTCCTTCATTCTGAAAGCCATCGCGGTTTTCGTCAAAGATGCAGTGCTGTACGATGTTGTCCAGGAGTCTGACAACTGCTCCACTGGTTCTGTTGGCTGCAAAGCTGTGATTGTGTTTTTCCAGTACTGCATTATGGCCAGTTTCTTCTGGCTGCTGGTGGAAGGTCTGTACATTCATGCTCTTCTCGCCGTCTCCTTCTTTTCTGAGAGGAAGTACTTCTGGTGCTACATCCTCATCGGTTGGGGAGGCCCAACCGTTTTCATCATGGCCTGGAGCTTTGCCAAGGCTTACTTCAATGATGTTGGATGCTGGGATATAATTGAAAATTCCGATCCTTTTTGGTGGATTATCAAAACCCCGATATTAGCTTCCATTCTGATGaactttattttgttcatttgtatCATCCGGATACTGAGGCAGAAGATCAACTGTCCTGACATCGGGAGAAATGAATCAAACCAATATTCGAGGCTGGCAAAATCAACACTTCTGTTGATTCCACTCTTTGGAATAAACTTTATCATATTCGCCTTCATTCCGGAGAACATCAAAACCGAGCTACGGCTTGTGTTTGACCTCATTCTCGGTTCATTTCAGGGTTTTGTGGTCGCTGTACTCTACTGTTTCCTAAATGGAGAGGTCCAAGGTGAAATCAAGAGGAAATGGAGGCGATGGCACCTCGAAAGATTTCTGGGTCCTGATACAAAATACCAGCACCCATCCATGGGCAGCAATGGCAACAACTTCAGCACACAGATCTCCATGCTGACTCGCTGCAGCCCTAAGACTCGCCGTGCATCCACATGTCAAGACGAGACATCCATCACAGTCTAACTGACCTACAACAGTGATTTACTACTGCCGTCTACGGCCAGACCCCGAGAGGCCATGCACATGTGCAGAAAGACTGAAATACTACATTACTCTTGGGATATATAAGTTactaaaattaaattgtttttgaaCATAGTGCAGTTTAAAGAGT

Function

symbol description
vipr1b Predicted to enable G protein-coupled peptide receptor activity; peptide hormone binding activity; and vasoactive intestinal polypeptide receptor activity. Acts upstream of or within adenylate cyclase-modulating G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including eye; gut; heart; integument; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in achalasia. Orthologous to human VIPR1 (vasoactive intestinal peptide receptor 1).

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007188 adenylate cyclase-modulating G protein-coupled receptor signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0007166 cell surface receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0017046 peptide hormone binding molecular_function
GO:0008528 G protein-coupled peptide receptor activity molecular_function
GO:0004888 transmembrane signaling receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004999 vasoactive intestinal polypeptide receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050311-6 Predicted to enable G protein-coupled peptide receptor activity; peptide hormone binding activity; and vasoactive intestinal polypeptide receptor activity. Acts upstream of or within adenylate cyclase-modulating G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including eye; gut; heart; integument; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in achalasia. Orthologous to human VIPR1 (vasoactive intestinal peptide receptor 1).

Ensembl:

ensembl_id ENSDARG00000059058

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046301 True 1741 mRNA 0.45 13 20708174 20808283

Neighbor

gene id symbol gene type direction distance location
XLOC_023409 nktr coding downstream 49506 20643658 ~ 20658668 (-)
XLOC_023408 zbtb47b coding downstream 67174 20589458 ~ 20641000 (-)
XLOC_023407 NA coding downstream 176361 20450027 ~ 20531813 (-)
XLOC_023406 vill coding downstream 263330 20418959 ~ 20444844 (-)
XLOC_023405 dlec1 coding downstream 338414 20332979 ~ 20369760 (-)
XLOC_023411 si:ch211-161h7.4 coding upstream 84499 20892782 ~ 20908395 (-)
XLOC_023412 si:ch211-161h7.5 coding upstream 101639 20909922 ~ 20915050 (-)
XLOC_023413 CR450812.1 coding upstream 107845 20916128 ~ 20952672 (-)
XLOC_023414 ccdc58 coding upstream 114261 20922544 ~ 20926812 (-)
XLOC_023415 kpna1 coding upstream 133077 20941360 ~ 20956781 (-)
XLOC_023665 dre-mir-735 misc upstream 17369678 38177961 ~ 38178027 (-)
XLOC_023401 BX247944.1 non-coding downstream 520744 20187316 ~ 20187430 (-)
XLOC_023400 NA non-coding downstream 523149 20181997 ~ 20185025 (-)
XLOC_023398 NA non-coding downstream 645124 20060691 ~ 20063050 (-)
XLOC_023397 CR381686.1 non-coding downstream 653917 20032331 ~ 20054257 (-)
XLOC_023437 AL627129.1 non-coding upstream 1154769 21963052 ~ 21963168 (-)
XLOC_023442 NA non-coding upstream 1245526 22053809 ~ 22066831 (-)
XLOC_023445 AL590147.1 non-coding upstream 1500661 22308944 ~ 22309058 (-)
XLOC_023446 CT573489.1 non-coding upstream 1563703 22371986 ~ 22372100 (-)
XLOC_023448 NA non-coding upstream 2070658 22878941 ~ 23218030 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000018_04118240_04160401 VIPR1B, VIPR1 coding CI01000018 null 4117987 ~ 4160401 (-)
rainbow trout (Oncorhynchus mykiss) LOC110527560 LOC106575088 misc NC_048571.1 CM023225.2 24915977 ~ 24965331 (-)