G415144


Basic Information

Item Value
gene id G415144
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 53948635 ~ 53949648 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU470520
GTAGAGGTACAGCTAGGGGCTTTTTTAAATGtcatttctttattttatttcacctttatttaaccaggtaggccagttgagaacaagttctcatttacaactgcgacctggccaagacaaagcaaagcagtgagacacaaacaacaacacagagttacacatggaataaacaaacgtacagtcaataacacaatagaaaagtatatacacagtgagtgcaaatgaggtaagattagggaggtaaggcaataaataggccgtagtgatgaagtaattacaatttagcaattaaacactggagtgacagatgtgcagaagatgaatgtgcaagtagagatactggggtgcgaatgagcaaaaacaaataataacaatatggggaagaggtagttgtatgggctatttacaggtgggctatgtacaggtgcaatgatctgtaagatACTCTGACAGCTgaagcttaaagttagtgagggagatacgagtctccagcttcagtgatttttgcaattcgttccagtcattagcagcagagaactggaaggaaaggcagccaaaggaggtgttggctttggggatgaccagtgaaatatacttgctggagctcgtgttacgggtgggtgctgctatggtgaccagtgagctgagataaggtggggctttacctagcaaagatttatatatgacctggagccagtgggtttggagacgaatatgtagcgagggccagccaacgagagcatacaggtcgcaatggtgggtcgtatatggggctttggtgacaaaacagatggcactgtgatagactgcatccaatttgctgagtagagtgttgaaggctattttgtaaatgacatcgccgaagtcaaggatcggtaggatagtcagttttacgagggtatgtttggcagcatgagtgaaggatgttttgttgtgaaataggaagccaattctagatttaatttaatctaaccagacacctaggtatttgtagctgtccacgtattctaagtc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU470520 True 1014 lncRNA 0.42 1 53948635 53949648

Neighbor

gene id symbol gene type direction distance location
LOC110524036 LOC106573996 coding upstream 7803 53929266 ~ 53940832 (+)
LOC110524034 LOC106613518 coding upstream 24747 53827955 ~ 53923888 (+)
LOC110524032 LOC106613514 coding upstream 147077 53766770 ~ 53801558 (+)
LOC110524030 LOC106613513 coding upstream 330070 53616527 ~ 53618565 (+)
opa1 LOC106613511 coding upstream 486379 53403769 ~ 53462256 (+)
LOC110524040 LOC106613524 coding downstream 1182 53950830 ~ 53961823 (+)
LOC110524039 LOC106613527 coding downstream 23943 53973591 ~ 53976232 (+)
LOC110524041 LOC106613525 coding downstream 41608 53991256 ~ 54005206 (+)
LOC118964527 NA coding downstream 66963 54016607 ~ 54018708 (+)
LOC110524043 NA coding downstream 70297 54019945 ~ 54024504 (+)
G415189 NA non-coding upstream 121416 53826979 ~ 53827219 (+)
G415182 NA non-coding upstream 131543 53816853 ~ 53817092 (+)
G415117 NA non-coding upstream 221025 53727409 ~ 53727610 (+)
G415112 NA non-coding upstream 230472 53717793 ~ 53718163 (+)
G415035 NA non-coding upstream 235914 53712500 ~ 53712721 (+)
G415467 NA non-coding downstream 58239 54007887 ~ 54008098 (+)
G415474 NA non-coding downstream 60943 54010591 ~ 54010880 (+)
G415543 NA non-coding downstream 127988 54077636 ~ 54077904 (+)
G415547 NA non-coding downstream 129821 54079469 ~ 54079672 (+)
G414488 LOC106562530 other upstream 836128 53112183 ~ 53112507 (+)
G414041 NA other upstream 1169156 52778517 ~ 52779479 (+)
G414007 NA other upstream 1186906 52761389 ~ 52761729 (+)
G412859 NA other upstream 2145815 51802250 ~ 51802820 (+)
camsap2a camsap2 other upstream 2810251 51059834 ~ 51153381 (+)
G415582 LOC106584099 other downstream 228281 54177929 ~ 54183430 (+)
G415808 NA other downstream 379547 54329195 ~ 54329780 (+)
G415809 NA other downstream 380432 54330080 ~ 54330480 (+)
mutyh mutyh other downstream 396888 54346481 ~ 54395448 (+)
G415946 NA other downstream 640426 54590074 ~ 54613142 (+)

Expression


Co-expression Network