G415464 (nexn)


Basic Information

Item Value
gene id G415464
gene name nexn
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 54002448 ~ 54005673 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU470871
AACTATATAATGCATATCATGTAGAGTTGTATTTTAGCTTAACATGAAGAAAAAAACTTTTGGGATATGAAAAATATTTTGTGTACCTTTTAGATGAACAAAATattaaaaaagaaaagaaacaaaaatcctaaatatatatttttattagtaACCAATGTTTCAGACAGATTGTGCATACTGTTGTATCTATTTCACAGGGATATCAAAAGGCTTTAAATTGGGTTGCACCATATTCTCAAATGAAACTTTATGAAATCTGACCTTTGAAGGGACATTTTCTCAGATGCACAGGCGTTGTGATCTATGATATGATCACAAAATCAATCTGAACGTCATTCATGGCAGCAATCACTCATGGGACCAATATGTGATTTGGCACAGATTTCATCCTAAACATAATAATGAAAGGGATGAATGATGAGCAATACGTAAACAACATGATCTTGCACTTTTCATTTTGTGTGTATCCCTAGAAGGAATGGCTAGCATACTGCTGTTTCCTCCTCTTTTTGGCTCTAACATGAGATATTACATTATacaaaaagagtgagagagacagggaaagttCCAGAAAAAGGAAAGCATCAGTAGTCCTCAGctggaagagagaaacagaaaaggGAGGTGTTACCCATAGATGAACCAGCTGAACCAAGCCAATGCGGAAGAGGAACATGCGATCCCATCCAATCATAGAAAGAGGAGCATGCGATCCCATCCAATCATAGGAAGATCagaaaactaaaacaggaagtggTATCATGCAGGCATGCAGTGGCAGTCAGACGGACGATTGCTTACTTTCTATCGTTAGGATACAAGTGCTGGCAGCGGTGCCTCTgctgttgacagctttgcacatgtaCTCTCCCTCGTCCTCTGGGAAGGTCTCTGGCAGGTAGAGGCAGaatgtctcccctctctctatgtacTGATAGTCCTCACAGTCCTGGAGCATATTCCCCTCAAACCACCAGGTCACCTCCGGCTTGGGCTCCCCAGTGATCTTCACCGTGAACCGCACTGGCTCGGCATCCACCACCGATTGGTTCTTCAGGGGCTTCTTAAACCACGGAGCCCCCGACCTGGCGtggtcctcctcatcctcatagGCTGCCGAGCCATTGATGAtgcttccctcttTTTTTGGAGAGCAGCGTCAATCTCTTGCTGCTCGAACTGCATCCTCTGCAGTTTCTGTTCCTCcacccttttcctctcctccccctctctggctTTGGCCATTTGTTCGAACCGTGCGCGCATGTCCACCTTCTGTCTGAACGGAGCCTCCTCAGCCCCCTTCTCTGTGTCCTTTTTGCCTTCATCATCCTCCTCCTGGACCcgctcttcttccctctctttgATTTCCTCGTCTACGGCCTTTCTCTTTGCTCTCACGTCCTCAATCGTTTTCTGGATCTCCTCGTCTTTCAACTGCTTGATCTTCTCAAACTTGGACTTGAGGTTCTTGGCCTGGATGGAGCCGGTCCTCTTGAGTTTCTTCAGCTCCTCATACTCCTTACTCACTGTATCAGAGCTCTCATTCACTTCATCTCTAGTTTCCCAGGGTGCAATGCTTCCTGGGACTCGCTCTTGAACATCCCTTCCTCTTCCTCGTCTAGCACCTGGCGGAATACAAACACAGAGCATGGTGTCATTTGACATTTCA
>TU470869
AACTATATAATGCATATCATGTAGAGTTGTATTTTAGCTTAACATGAAGAAAAAAACTTTTGGGATATGAAAAATATTTTGTGTACCTTTTAGATGAACAAAATattaaaaaagaaaagaaacaaaaatcctaaatatatatttttattagtaACCAATGTTTCAGACAGATTGTGCATACTGTTGTATCTATTTCACAGGGATATCAAAAGGCTTTAAATTGGGTTGCACCATATTCTCAAATGAAACTTTATGAAATCTGACCTTTGAAGGGACATTTTCTCAGATGCACAGGCGTTGTGATCTATGATATGATCACAAAATCAATCTGAACGTCATTCATGGCAGCAATCACTCATGGGACCAATATGTGATTTGGCACAGATTTCATCCTAAACATAATAATGAAAGGGATGAATGATGAGCAATACGTAAACAACATGATCTTGCACTTTTCATTTTGTGTGTATCCCTAGAAGGAATGGCTAGCATACTGCTGTTTCCTCCTCTTTTTGGCTCTAACATGAGATATTACATTATacaaaaagagtgagagagacagggaaagttCCAGAAAAAGGAAAGCATCAGTAGTCCTCAGctggaagagagaaacagaaaaggGAGGTGTTACCCATAGATGAACCAGCTGAACCAAGCCAATGCGGAAGAGGAACATGCGATCCCATCCAATCATAGAAAGAGGAGCATGCGATCCCATCCAATCATAGGAAGATCagaaaactaaaacaggaagtggTATCATGCAGGCATGCAGTGGCAGTCAGACGGACGATTGCTTACTTTCTATCGTTAGGATACAAGTGCTGGCAGCGGTGCCTCTgctgttgacagctttgcacatgtaCTCTCCCTCGTCCTCTGGGAAGGTCTCTGGCAGGTAGAGGCAGaatgtctcccctctctctatgtacTGATAGTCCTCACAGTCCTGGAGCATATTCCCCTCAAACCACCAGGTCACCTCCGGCTTGGGCTCCCCAGTGATCTTCACCGTGAACCGCACTGGCTCGGCATCCACCACCGATTGGTTCTTCAGGGGCTTCTTAAACCACGGAGCCCCCGACCTGGCGtggtcctcctcatcctcatagGCTGCCGAGCCATTGATGAtgcttccctcttcctcctcctcatcttcccttTTTTGGAGAGCAGCGTCAATCTCTTGCTGCTCGAACTGCATCCTCTGCAGTTTCTGTTCCTCcacccttttcctctcctccccctctctggctTTGGCCATTTGTTCGAACCGTGCGCGCATGTCCACCTTCTGTCTGAACGGAGCCTCCTCAGCCCCCTTCTCTGTGTCCTTTTTGCCTTCATCATCCTCCTCCTGGACCcgctcttcttccctctctttgATTTCCTCGTCTACGGCCTTTCTCTTTGCTCTCACGTCCTCAATCGTTTTCTGGATCTCCTCGTCTTTCAACTGCTTGATCTTCTCAAACTTGGACTTGAGGTTCTTGGCCTGGATGGAGCCGGTCCTCTTGAGTTTCTTCAGCTCCTCATACTCCTTACTCACTGTATCAGAGCTCTCATTCACTTCATCCTTTGGAAAGAAGCACATTGAACTGATGAGTGATGAGGATACGATCACAATCGAagcatacagtgagctccaaaag

Function

symbol description
nexn Predicted to enable cell-cell adhesion mediator activity. Acts upstream of or within cardiac muscle cell development. Located in Z disc. Is expressed in adaxial cell; cardiovascular system; musculature system; and somite. Human ortholog(s) of this gene implicated in dilated cardiomyopathy 1CC and hypertrophic cardiomyopathy 20. Orthologous to human NEXN (nexilin F-actin binding protein).

NR:

description
nexilin-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU470871 False 1675 lncRNA 0.45 4 54002448 54005673
TU470869 True 1655 TUCP 0.45 3 54003731 54005673

Neighbor

gene id symbol gene type direction distance location
LOC110524038 LOC106613526 coding downstream 27330 53961942 ~ 53989222 (-)
prrg1 LOC106613522 coding downstream 56846 53940943 ~ 53945602 (-)
ccdc181 ccdc181 coding downstream 73712 53922807 ~ 53928736 (-)
LOC110524031 LOC106613515 coding downstream 252180 53746858 ~ 53750268 (-)
LOC118964619 LOC106613459 coding downstream 256885 53740644 ~ 53745563 (-)
LOC110524044 NA coding upstream 28830 54034503 ~ 54048020 (-)
LOC110524046 LOC106613532 coding upstream 163284 54168957 ~ 54193614 (-)
LOC110522970 LOC106613460 coding upstream 194517 54200190 ~ 54249220 (-)
LOC110522871 LOC106613983 coding upstream 292120 54297793 ~ 54301057 (-)
LOC110522971 NA coding upstream 296307 54301980 ~ 54305832 (-)
G415460 NA non-coding downstream 7887 53994019 ~ 53994561 (-)
G415439 NA non-coding downstream 63149 53938168 ~ 53939299 (-)
G415393 NA non-coding downstream 147639 53854280 ~ 53854809 (-)
G415363 NA non-coding downstream 175864 53826216 ~ 53826584 (-)
G415468 NA non-coding upstream 2466 54008139 ~ 54008478 (-)
G415475 NA non-coding upstream 5160 54010833 ~ 54011038 (-)
G415477 NA non-coding upstream 6273 54011946 ~ 54012151 (-)
G415540 NA non-coding upstream 69249 54074922 ~ 54075202 (-)
G415546 NA non-coding upstream 73510 54079183 ~ 54079454 (-)
G415420 NA other downstream 109542 53890760 ~ 53892906 (-)
G415256 LOC106613513 other downstream 383584 53617683 ~ 53618864 (-)
G412613 NA other downstream 2389886 51558378 ~ 51612562 (-)
G412372 NA other downstream 2625318 51373465 ~ 51377130 (-)
LOC110524003 LOC106613485 other downstream 2817673 51179758 ~ 51228505 (-)
G416110 NA other upstream 357613 54363286 ~ 54392411 (-)
LOC110524071 LOC106613554 other upstream 1135642 55123617 ~ 55181458 (-)
G417527 NA other upstream 1603162 55608835 ~ 55609730 (-)
LOC110522975 LOC106613586 other upstream 2703125 56703896 ~ 56711499 (-)
G418830 NA other upstream 2828353 56834026 ~ 56834595 (-)

Expression


Co-expression Network