XLOC_023412 (si:ch211-161h7.5)


Basic Information

Item Value
gene id XLOC_023412
gene name si:ch211-161h7.5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 20909922 ~ 20915050 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046305
tCCTCACAGTGTCACGTTACCTTCCTTCTCTGCATTCAGTGCTCGCTTTCAGACTGCAGCTGCTTTCACATGTGAggaacatCAGTTCAGAATGGGAGATCACAGCGTTGCTCGGCTTTCCCTCATCATCTTTTCTGTTGTGTTGTACATTATCTGCATTGTATTCAATGTGCTTGCTGGACCAGGAAAAGGTCCATTTCGTAACACCACTAGCGCTATATCAAACAAGTATAACACTGAGGTCACTCCGTCGGGATGGACCTTCTCCATCTGGGGTGTCATTTACACCTGGCTGTCGCTCATGATCGCTTACATTCTCTCCACTACATGCAGGAGtGTTAATGGCCCGATGTACTGCAGTCCTGCTGTGTTGTCGTATCCATTCTTCATCGTCTGGATTATAAACATGCTGTTGAACATTGGCTGGCTCCTTCTGTGGGACAGAGAGGTGATGATTGCTGCACTGATTTTCCTTGCTTTGATTGCCTTCACAAACTATTTGCTCATAATCTTCACCTGCCGTGCCCTTAAACAACATGGATCCTGGTTAAACAAATATCATAAAGTTGACCTCTGGTGCATCCGGATAATGGTTCAGAACGGCATTGCAATTTATACAACATGGACAACTATTGCAACCCTGATCAACTTCACTATTGTGCTGAGATATGAAGCCGGAATGACTGATTCAGATGCAGCGAccgtctctctctctgttttgttGGGCGAAGCTATTGCTTGGTTCATTGTGGAGACTTTTGTGTTTGAGAAGCACCTACGATACATTCTGACTGTCTACCCTGTTGTTATCGTGGCTTTGAGTGGAAACATGACAAAGAACTTTAACTCTGCGGATCCGAGCAGAAATGGCATTTACATAGCTGTTTTACTGGGTTTGGCTTCTGCACTATTTGCGATCAAGGTTTTGCTGGTCATTTGGAGACACATTAAGCATCCTCTCTACAGAGACATGAATGCAGATGAAGCTGTGTTACCGATGGAGACCTCTGAAAAACAAAAGACGATTCAATTCTAAATTTATAATCatccaaaaatatgtttttattattatttatttttaatcatttaagtatgtatattttatatgtacatttGATAAATAATAGAGAAAATTTTGTGATGAAATGCAAAGCTTGTGTAGGTGAGTTACACAAAAGGAATTACTCATATCAGGGTAAAGGGGTTTCAGTATTGAGTATCTTACAGTGACCGTGACCTGTGTGTTTTCTacaacaataaaattataatgaATAACTGAAGATATGGAAGTTTCAGAAGTGAAGTCAGGAGACAGCATTTTAAAAGGGAGATGTGAAGGAATTTAACAATAATTGGTTGCCATATGTTTTCCAGTTACCCAAGTTGTATATGATTTTTGTACATATGATgatgaatataaataattattttatatgaaaaaa

Function

symbol description
si:ch211-161h7.5 Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-091204-265 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000093044

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046305 True 1442 mRNA 0.39 8 20909922 20915050

Neighbor

gene id symbol gene type direction distance location
XLOC_023411 si:ch211-161h7.4 coding downstream 1527 20892782 ~ 20908395 (-)
XLOC_023410 vipr1b coding downstream 101639 20708174 ~ 20808283 (-)
XLOC_023409 nktr coding downstream 251254 20643658 ~ 20658668 (-)
XLOC_023408 zbtb47b coding downstream 268922 20589458 ~ 20641000 (-)
XLOC_023407 NA coding downstream 378109 20450027 ~ 20531813 (-)
XLOC_023413 CR450812.1 coding upstream 1078 20916128 ~ 20952672 (-)
XLOC_023414 ccdc58 coding upstream 7494 20922544 ~ 20926812 (-)
XLOC_023415 kpna1 coding upstream 26310 20941360 ~ 20956781 (-)
XLOC_023416 qtrt2 coding upstream 143729 21058779 ~ 21090584 (-)
XLOC_023417 zdhhc23b coding upstream 207786 21122836 ~ 21131607 (-)
XLOC_023665 dre-mir-735 misc upstream 17262911 38177961 ~ 38178027 (-)
XLOC_023401 BX247944.1 non-coding downstream 722492 20187316 ~ 20187430 (-)
XLOC_023400 NA non-coding downstream 724897 20181997 ~ 20185025 (-)
XLOC_023398 NA non-coding downstream 846872 20060691 ~ 20063050 (-)
XLOC_023397 CR381686.1 non-coding downstream 855665 20032331 ~ 20054257 (-)
XLOC_023437 AL627129.1 non-coding upstream 1048002 21963052 ~ 21963168 (-)
XLOC_023442 NA non-coding upstream 1138759 22053809 ~ 22066831 (-)
XLOC_023445 AL590147.1 non-coding upstream 1393894 22308944 ~ 22309058 (-)
XLOC_023446 CT573489.1 non-coding upstream 1456936 22371986 ~ 22372100 (-)
XLOC_023448 NA non-coding upstream 1963891 22878941 ~ 23218030 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000018_04231186_04233076 NA coding CI01000018 null 4230919 ~ 4233076 (-)