G415582 (LOC106584099)


Basic Information

Item Value
gene id G415582
gene name LOC106584099
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 54177929 ~ 54183430 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU471018
AGTACTTGAGTAAAGTACTCGATAAagctcaaactttcataaaaatacacaaggtactgaattaaagctacactcgttgtgaatctagccaccaagtcagatttgtaaaatgcttttcggcgaaagcatgagaagctattatctgatagcatgcaccccccaaaataccagcacgacacgtaaacaacagattttgcggtagcggcgctacccaaaacgcagaaataaaatataaaacattcattaccttggacgagcttctttgttggcactcctatatgtcccataaacatcacaattgggtctttttcccgattaaatccgtcattgtatacccaaaatgtcattttctGAAGACCAGTCTGATGCTGAGAAaagtccatttacaagacgcaacgtcactttttaaaattacaaaagtcgcctataaacttttacaaatcacttcaaacgacttttctaaaccaactttaggtattaataaacgttaatgatgtatcaaattgatcacggggcgatctgtattcgatagcagcaagtctggaaatcatcgtccattttttcagtttcacaacatactgtgatgcgcctcaagaaaggaggggtctattcgtgttgtaaccaaggataaatgattctgatattgatagcaatggcgacatcgtatggcagctgtaggcgtttacagggggttcgcatatattttctctcgtcttaaacaattcattgaatggcggacgaatattttgtttttgtttttggtaaacagttttaccagggatttttactcctaaacacgttctgttatagccacagacccgatttaaccagttttagaaacttcagagtgttttctatccacacatactatattcctggcatgagtagcaggactttgaaatgttgcgcgatttttaacaaaaagctgcgaaaattcgcatcatccataacaggttttaacactttttggttactgaaAGATTtcataggtgttatttcatagttttgatgtattcactattgttctacaatgtataaaatagtagaaataaagaaaaacccttgaatgagtaggtgtgtccaaatgtttgactggtactgtatatatttgacagTTTGTGGGCAATTTGATATGATAGTTGTTGACAATTAGGCTAAATGTCTTATAAATGTCCTATGAATATAACATGATTAAAAATGACTCAAGAGCCATAAGAGTCTAGTAATATATCTctgatataaactcagcaaaaaaggaccctgtctttcaaagataattcataaaaatcgaaataacttcacagatcttcattgtaaagggtttaaaataCTGTTTCCCTTGCTTGTTCaaagaaccataaacaattaatgaacatgcaccagtggaacggtcgttaagacactaacagcttacagacggtaggcaattaaggtcacagttatgaaaacttaggacactaaagaggcctttctactgaccttgaaaacaccaaaagaagatgcccaggatccctgctcatctgcgtgaacgtgctttaggcatgctgcatggcggcatgaggactgcagatgtggccagagcaataaattgcaatgtccgtactgtgatacgcctaagacagagctacagggagacaggacgggcagctgattgtcctcacagtggcaTACCACGTGTAACAagacctgcacaggatcggtacatccgaacatcacatcagcaggacaggtacagaatggcagcaacaactgcccgagttacaccaggaacgcacaatccctccatcagtgctcagactgtccgcaataggcggACCTGTTGTAATAGGAccagttgtaaggcaggtcctcaccagacatgaggctcatcctgacatgaccctccagcatgacaatgccaccagccatacacCTCGTACTGTGTGTGATTTACTGCAAGACAGgattgtcagtgttctgccatggccagcgcagagcccggatctcaatcccattgagcacgtctgggacctgttagatcggagggtgagggcttgagccattccccctaggaacttgcaggtgccttggtggaagagtggggtaacatctcacaacaagaactggcaaatctggtgcagtccatgaggaggagattgcagtacttaatgcagctggtggccacaccagatactgactgttacttttgaatttgactccccc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU471018 True 2202 TUCP 0.41 2 54177929 54183430

Neighbor

gene id symbol gene type direction distance location
obscna LOC106613530 coding upstream 8971 54083355 ~ 54168958 (+)
zgc:153738 LOC106613531 coding upstream 120554 54049039 ~ 54057375 (+)
LOC110524043 NA coding upstream 153425 54019945 ~ 54024504 (+)
LOC118964527 NA coding upstream 159319 54016607 ~ 54018708 (+)
LOC110524041 LOC106613525 coding upstream 172723 53991256 ~ 54005206 (+)
mutyh mutyh coding downstream 163051 54346481 ~ 54395448 (+)
LOC110524051 LOC106613536 coding downstream 190774 54374204 ~ 54378738 (+)
dio1 dio1 coding downstream 364083 54547513 ~ 54550162 (+)
LOC110522872 LOC106613984 coding downstream 368925 54552355 ~ 54554389 (+)
LOC118964620 NA coding downstream 406528 54589958 ~ 54595332 (+)
G415552 LOC106613532 non-coding upstream 2843 54169117 ~ 54175086 (+)
G415550 NA non-coding upstream 96063 54081625 ~ 54081866 (+)
G415547 NA non-coding upstream 98257 54079469 ~ 54079672 (+)
G415543 NA non-coding upstream 100025 54077636 ~ 54077904 (+)
G415748 NA non-coding downstream 82633 54266063 ~ 54266343 (+)
G415750 LOC106613533 non-coding downstream 125405 54308835 ~ 54312141 (+)
G415807 NA non-coding downstream 144969 54328399 ~ 54328696 (+)
G415812 LOC106562530 non-coding downstream 150387 54333817 ~ 54334053 (+)
G415819 NA non-coding downstream 161445 54344875 ~ 54345101 (+)
G414488 LOC106562530 other upstream 1065422 53112183 ~ 53112507 (+)
G414041 NA other upstream 1398450 52778517 ~ 52779479 (+)
G414007 NA other upstream 1416200 52761389 ~ 52761729 (+)
G412859 NA other upstream 2375109 51802250 ~ 51802820 (+)
camsap2a camsap2 other upstream 3039545 51059834 ~ 51153381 (+)
G415808 NA other downstream 145765 54329195 ~ 54329780 (+)
G415809 NA other downstream 146650 54330080 ~ 54330480 (+)
G415946 NA other downstream 406644 54590074 ~ 54613142 (+)
G416857 NA other downstream 1141215 55324645 ~ 55325271 (+)

Expression


Co-expression Network