G415750 (LOC106613533)


Basic Information

Item Value
gene id G415750
gene name LOC106613533
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 54308835 ~ 54312141 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU471197
acgacatttattggatatttcaaacttttttaacaaatcaaaaactgaaaaattgggcttatTAGACGTATTAACTTCACTAAAACTTTTATTAAAAACAACCATAATAGAAAGTTATTTGTCGTGAACATATGATCATGACCCCCATTTTTCAAAGTAACATTAAACAGACATTAGAACGATCAGACCCTGTTTTAAGCCCCGcatttgtttttttggggggggtcttgcctgttttgcatgttattttggcattaatacacgtcacatatcagtttgcaaacaatttaaaaaatatatatataaatataattgagttaataaagctgcatacaaacatggtttcttttttgttttcttgagtaaggcagctccaaaaagcaggtgtttcagcctagctcagtgctttctgtggtggtggggcaagacagcagaaaatacggagcgttgcaccatgattggctcagtgttctgtcactcatggggacactatgttacattagaagtgcccatacAAGAAGGATCAATGTCATTGGCCACCCATAAAATTACATCAATTCAcagtatatgtacagtagctttgattggactgctttcaaaatcttagctataGCAGTCATCaccatgaatcaagtcgacaatctactgtcaactctttttaatccttgtcatatgaagagaaataatgaagagaaattatagataaaatgtatcagtgctcatcggccattggatataaacattacacaactagtttgaatcagtgacagtggctgtgtggtcccaaatctgggataAAGGGGCTCTTTTCCACGTTTAAAAtgaaaacattcaacattggccatgctgtcaatgaagcatgatttatGCTGCGCTCAAAACAACCGTTAACTTGGAACTGCGAAAACATGACTTTtttgagttcaagacaactgggaaatacggaaaaaaacgagctccgactgggaaatacgttttgaacggactctggcctctttctagagctacgacctgaagatcaccgaagtcatcatgattcaaccagttcccagttgtcttgaaagcaccataaagaGACTTTGATCACAAAAGTCCACAAAGGACCACCGTGCCACCTTCCTgatcaagtgagcacagcacaacaaggtgagtccaaaaatgtattgtatgctgctgcataaatgatgtaatatgccagggagatatgtatactgtatctaagaaagtaatactaagtgtatgttgtgtagtaagctgttagtagcccatgtgcctcacccgtGCTGCTACATTgcttgcagtttggggttttaggctgggtttctgtatagcactttgtgacatcagctgatgtaaaaagggctttttaatacatttgattgattgatcatttggtctatttacccctcttaatttcgcctactgttctgacttggtgatgcacatgtagcctataacctgttttagagaaatgtaatcatcaaattttggaagagctttcattgtctgcttaaatGCCCCCTTTTTTTTATCCTACGcttgacttggtgtacagggagaacactgtaaaaacggcccatgttctgaattctgtcgctgtacatctcaaaagtgctaaacaaatagttatgactatatccgtcctagctcgctcattaacgtcttaatcgaaattatggattgcctcttatcctccCCTTattccatagtttgtacatctcaattgtcagtagaaactacatttgtttaagcaagtcagccatttcaggcggaattaactgtttcgctgccagacaaagacgctgatagccaggtgttgcagtggtaaggtgttgggactgctgttgggagtTGACCCTAAGTTGACCCTAACAGTTTGCGGGCACTgcttgtcaccgttatagtgcaattaatgtattgtttagtgttgtggctttgctggcatgcatcccatttatttgtttttttgccacaccaagatttacatgctaaaatagcCACTGAGAATGATAATGCAGTGTTGCCTGGAAGTGACATTCAGAAGATATTGGATGGGTTAAACAAAACACTTAGGATTACATACATTGACGTTGCTAAAATTGCTTTGTTAAACTTGGATAATTGAAAAAGAACTACTAACTACCAAGTGATCTTCGTTCACTTTATCTCCTCATATTCCTGTCCCTCTACTTCCTGCTAATTCTCCTTGATCTCAGTGGTGTACACAGGCTGAACCACCACACGGTAGGAGAACTGGTCTGAGTGGCACGGATAGGCCTGGCCCGCAGAGATGTTTGCTGGAATCTGGGCCTGATTTCCGCCATTGCCAATCGTGGATGCAAAATCCTGGACATGGAATACAAACTCCCCTTCACACATCAGGACAACCTTGTTGAGGTAGCGGATGCTGTCCTGATACTCTTGGGGCAACTCCCTGTTATTCTGGGCAGTTAGCGAGACCATCGGCAGCGACGGACAGCGGATGCCGCTGTTTGAGCATTCATGGTTGTGGATAAAGACCCTGGTGTTCCAGTTGAGCTTTTTGAACAGGGAAAAAAAGGCACTGTTGTGCACAGGGCTGTCAAAGTTGGCACTGAGGCTGTTGAGGTTCTGGCCTGAGTGGTAATAGTGTCCGACGTATCGGAACGTGTTGAGCTCCTTTGAGCTGAAAGTGAAGCTCCATGGCTTGCCAGTGTAGATCCTGGGTGTGTATTCCACCTTTTTAAGGAGGAGGCCCCCAGCTAGCGTCTGGAAGGGTAGTGCATTGAACTGAAAGCCCTGCAACATGCCGGCATTATAACGCTCTTGTTGGTCCATGTACAGTTCAGACTTGGCTTTGAGGTTGAACAAATCTTCAGCAGCGATCATGGGGAAACGGATGTGGTTCAAAATGGCGACCTGGTCTTCATGGGTGGACAAGTTACCCTGTTCCAACACCCAGTCCTCCAAACCCTTTAGGAGGAAGGCCTCATCTGGCACTACCACGTCTGAACGGGCTAGAAGGGCCTTTACTGTGCCCAGGGCAAGACCAGTCCAGGCTGGGGAACGGATCAGTGACTCACAGTTCCAGGCAAGGTAGCGCAGACATGTTTCCTGCAGAACTGTGTCGCCTGTGTGGACTGAGTACTCGTACAGAGAGGtctgggtctggaaggaggcatCATCGGGGAGCAGCCAGGTGAAAAGCCTCCCTGCCGCCTCCTGAAGCTGCTTCAGACCCCAGTCGGACGCCATCTTGTGGATGCACTGGGCAGAGGACATGGTCACGTTAATCTGCCGC

Function

NR:

description
galectin-3-binding protein B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU471197 True 3280 lncRNA 0.44 2 54308835 54312141

Neighbor

gene id symbol gene type direction distance location
obscna LOC106613530 coding upstream 139877 54083355 ~ 54168958 (+)
zgc:153738 LOC106613531 coding upstream 251460 54049039 ~ 54057375 (+)
LOC110524043 NA coding upstream 284331 54019945 ~ 54024504 (+)
LOC118964527 NA coding upstream 290225 54016607 ~ 54018708 (+)
LOC110524041 LOC106613525 coding upstream 303629 53991256 ~ 54005206 (+)
mutyh mutyh coding downstream 34340 54346481 ~ 54395448 (+)
LOC110524051 LOC106613536 coding downstream 62063 54374204 ~ 54378738 (+)
dio1 dio1 coding downstream 235372 54547513 ~ 54550162 (+)
LOC110522872 LOC106613984 coding downstream 240214 54552355 ~ 54554389 (+)
LOC118964620 NA coding downstream 277817 54589958 ~ 54595332 (+)
G415748 NA non-coding upstream 42492 54266063 ~ 54266343 (+)
G415552 LOC106613532 non-coding upstream 133749 54169117 ~ 54175086 (+)
G415550 NA non-coding upstream 226969 54081625 ~ 54081866 (+)
G415547 NA non-coding upstream 229163 54079469 ~ 54079672 (+)
G415543 NA non-coding upstream 230931 54077636 ~ 54077904 (+)
G415807 NA non-coding downstream 16258 54328399 ~ 54328696 (+)
G415812 LOC106562530 non-coding downstream 21676 54333817 ~ 54334053 (+)
G415819 NA non-coding downstream 32734 54344875 ~ 54345101 (+)
G415886 NA non-coding downstream 146089 54458230 ~ 54496389 (+)
G415582 LOC106584099 other upstream 125405 54177929 ~ 54183430 (+)
G414488 LOC106562530 other upstream 1196328 53112183 ~ 53112507 (+)
G414041 NA other upstream 1529356 52778517 ~ 52779479 (+)
G414007 NA other upstream 1547106 52761389 ~ 52761729 (+)
G412859 NA other upstream 2506015 51802250 ~ 51802820 (+)
G415808 NA other downstream 17054 54329195 ~ 54329780 (+)
G415809 NA other downstream 17939 54330080 ~ 54330480 (+)
G415946 NA other downstream 277933 54590074 ~ 54613142 (+)
G416857 NA other downstream 1012504 55324645 ~ 55325271 (+)

Expression


Co-expression Network