G416110


Basic Information

Item Value
gene id G416110
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 54363286 ~ 54392411 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU471641
gtcctatatcgacataacctgaaatgccgctcagcatggaagaagccactgctccaaaaccggcataaaaaaagccagactacggtttgcaactgcacatggggacaaagatcatactttttggagaaatgtcctctggtctgatgaaacaaaaacagaactgtttggccataatgaccatcgttatggttggaggaaaaagggggagccttgcaagccgaagaacaccatcccaaccgtgaagcacggggtggcagcatcatatggtgagggtgctttgctgcaggagggactagtgcaactccacaaaatagatggcatcatgaggtatgaaaattatgtggatatattgaagcaacatctcaagacatcagtcaggaagttaaagcttggtcgcaaatgggtcttccaaatggacaatgaccccaagcatacttccaaagttgtggcaaaatggcttaaggacaacaaaggcaatgtattggagtggccatcacaaagccctgacctcaatccaatagaccatttgtgggcagaactgaaaaggcgtgtgcgagcaaggaggcctacaaacctgactcagttacaccatctctgtcaggaggaatgggccaagattcacccatcttattgtaggaaacttgtggaaggctacctgaaacgctTGACCCAAGATAAataatttaaagacaatgctaccaaatactaattgagggtatgtaaacttctgacccactgggaatgtgatgaaagaaatacaagctgaaatatatccccctctactattattctgacatttcacattcttaaaataaagtggtgatcctaactgacctaaaacagggaatttctttctaggattaaatgtcaggaattgttaaaaactgagtttaaatatactTGGCTGAgttgtatttaaacttccgacttcaactgtataggagGCCACTGTTGCaatttgttatttaaaaaaaataataataattgtattcAGCATACAACTCAATGACACACTTTTTGCTCTTAAAGTATTCCACTCATGGGATGAACACCCAGACCACTTGTGGCAGTTATCCAGACAGCAAGGCACAGTAGTAGTCCTTGTATGGTACTTGATCagctttaaataaaataaaaaaacgacATTGTTATTCATTGCGAGTAAGTATAAATTGATCAAGTTTCTTGTTTTGGGCTCTTGAAGAAGGAACTGAGTGACAGCTGTCTGGTCCCGCTGTTTGTTGAATTGTCTTTGAGCTTTTTAGACTTGTGCTGTCCATCACTCTTAGTGTTAGT
>TU471642
gttcgacccaagttaaacaatttaaaggcaatgctaccaaatactaattgagtgtatgtaaacttctgacccactgggaatgtgatgaaagaaataaaagctgaaataaatcccctctactattattctgacatttcacattcttaaaataaagtggtgatcctaactgacctaaaacagggaatttctttctaggattaaatgtcaggaattgttaaaaactgagtttaaatatactTGGCTGAgttgtatttaaacttccgacttcaactgtataggagGCCACTGTTGCaatttgttatttaaaaaaaataataataattgtattcAGCATACAACTCAATGACACACTTTTTGCTCTTAAAGTATTCCACTCATGGGATGAACACCCAGACCACTTGTGGCAGTTATCCAGACAGCAAGGCACAGTAGTAGTCCTTGTATGGTACTTGATCagctttaaataaaataaaaaaacgacATTGTTATTCATTGCGAGTAAGTATAAATTGATCAAGTTTCTTGTTTTGGGCTCTTGAAGAAGGAACTGAGTGACAGCTGTCTGGTCCCGCTGTTTGTTGAATTGTCTTTGAGCTTTTTAGACTTGTGCTGTCCATCACTCTTAGTGTTAGT

Function

NR:

description
adenine DNA glycosylase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU471641 False 1296 TUCP 0.41 2 54363286 54386228
TU471642 True 633 lncRNA 0.35 2 54363286 54392411

Neighbor

gene id symbol gene type direction distance location
LOC110524048 NA coding downstream 35578 54326233 ~ 54327989 (-)
LOC110524047 LOC106613533 coding downstream 43817 54310588 ~ 54319469 (-)
LOC110522971 NA coding downstream 57454 54301980 ~ 54305832 (-)
LOC110522871 LOC106613983 coding downstream 62229 54297793 ~ 54301057 (-)
LOC110522970 LOC106613460 coding downstream 114066 54200190 ~ 54249220 (-)
ssbp3b ssbp3 coding upstream 162640 54555051 ~ 54587190 (-)
erich3 erich3 coding upstream 247870 54640281 ~ 54661854 (-)
slc44a5b LOC106613541 coding upstream 324915 54717326 ~ 54770286 (-)
LOC110524065 elov7 coding upstream 506685 54899096 ~ 54924752 (-)
LOC118964528 NA coding upstream 605275 54997686 ~ 55005447 (-)
G416111 mutyh non-coding downstream 7131 54355522 ~ 54356155 (-)
G416107 NA non-coding downstream 10912 54351930 ~ 54352374 (-)
G416106 NA non-coding downstream 11597 54351288 ~ 54351689 (-)
G416100 NA non-coding downstream 24977 54338100 ~ 54338309 (-)
G416095 NA non-coding downstream 32585 54330351 ~ 54330701 (-)
G416166 NA non-coding upstream 65818 54458229 ~ 54495364 (-)
G416253 NA non-coding upstream 264362 54656773 ~ 54664627 (-)
G416409 LOC106613542 non-coding upstream 440057 54832468 ~ 54833938 (-)
G416408 NA non-coding upstream 442805 54835216 ~ 54836716 (-)
G416417 NA non-coding upstream 453673 54846084 ~ 54846546 (-)
G415464 nexn other downstream 357613 54002448 ~ 54005673 (-)
G415420 NA other downstream 470380 53890760 ~ 53892906 (-)
G415256 LOC106613513 other downstream 744422 53617683 ~ 53618864 (-)
G412613 NA other downstream 2750724 51558378 ~ 51612562 (-)
G412372 NA other downstream 2986156 51373465 ~ 51377130 (-)
LOC110524071 LOC106613554 other upstream 748904 55123617 ~ 55181458 (-)
G417527 NA other upstream 1216424 55608835 ~ 55609730 (-)
LOC110522975 LOC106613586 other upstream 2316387 56703896 ~ 56711499 (-)
G418830 NA other upstream 2441615 56834026 ~ 56834595 (-)
G419603 NA other upstream 3218648 57611059 ~ 57611567 (-)

Expression


Co-expression Network