G416166


Basic Information

Item Value
gene id G416166
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 54458229 ~ 54495364 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU471719
gaaatgtttgaatattcattacaccatgcaggggaatgcagtgtttggacaacaaacttaacacagagctgtgagatttttgactattcattacaacatgcaggggaatgcagtgattaggcaacagactatacacagagtttgaaaatgtttggctattcattacaccatgcggtgaatgaggtgattggacaacagactttacacagagttgggagatttttgactagtctttatacagtacaggggaatgcagtgaatggacagcagactttacacagagtttggaaatgtttgaatattcattacaccatgcaggggaatgcagtgattggacaacagactttacacagagctgtgagatttttgactattcattacaacatgcaggggaatgcagtgattaggcaacagaatttacacagagtttggatatgtttgtctagtcattacaccttgcaggggaatgcagtttttggagatgtttgaatattcattacaccatgcaagggaatgcagtgattggacaacagactttacacagagtttggagatgtttgactTTTCATTACAACATGCAGGGGAAAACAGTGATTGGgcaacagactatacacagagtttgTAGATGTTTGAATAGTCATTAcatcatgcaggggaatgcagtcatTGGACAACAGGCTTTACACAGAGttgtgagatttttgactagtctttacacagtgcaggggaatgcagtgattggacaacagacttaacACAGCATTTTGAGATGTTTGGCTATTCATTACACTATgcaagggaatgcagtgattggacaacaaactttacacagagtttggagatTTTTGACGGGTCTTTACACAGTGCAGgtgaatgcagtgattggacaacatactttacacagagtttggaaatgtttgtctagtcattacaccttgcaggggaatgcagtgtttggacaacagactttacacagagttgtgagatttttgactattcattacaacatgcaggggaatgcagtgtttggagaTGTTTGTCTAGTCATTACACCTTGCAGGGGAATATAGTGTTTGGACAACagactttacacagagttgtgaGATTTTTGACTATGCATTACAACATGCAGGGGAAAACAGTGATTGGgcaacagactatacacagagtttggagatgtttgactagtcattacaccatgcagggtaatgcagtga
>TU471707
ttacacagtgcaggggaatgcagtgattggacaacatactttacacagagtttggaaatgtttgtctagtcattacaccttgcaggggaatgcagtgtttggacaacagactatacacagagtttgaaaatgtttggctattcattacaccatgcggggaatgcagtgattggacagcagactttacacagagtttggaaatgtttgaatattcattacaccatgcaggggaatgcagtgtttggacaacaaacttaacacagagctgtgagatttttgactattcattacaacatgcaggggaatgcagtgattaggcaacagactatacacagagtttggagatgtttgaatattcattacaccatgcaagggaatgcagtgattggacaacagaatttacacagagtttggataTGTTTGTCTAGTCATTACACCTTGCAGGGGAATAGAgtgtttggagatgtttgaatattcattacaccatgcaagggaatgcagtgattggacaacagaatttacacagagtttggataTGTTTGCCTAGTCATTACAccttgcaggggaatgcagtgtttggagaTGTTTGTCTAGTCATTACACCTTGCAGTGGAATCCAGTGTTATGACaatagactttacacagagttgtgaGATTTTTGAATTTTCATTACAACATGCAGGGGAAAACAGTGATTGGgcaacagactatacacagagtttgTAGATGTTTGAATAGTCATTAcatcatgcaggggaatgcagtcatTGGACAACAGGCTTTACACAGAGttgtgagatttttgactagtctttacacagtgcaggggaatgcagtgattggacaacagacttaacACAGCATTTTGAGATGTTTGGCTATTCATTACACTATgcaagggaatgcagtgattggacaacagactttacacagagctgtgagatttttgactattcattacaacatgcaggggaatgcagtgattaggcaacagactatacacagagtttggagatgtttgtaTGGTCATTACACttttgcaggggaatgcagtgtttggagaTGTT

Function

NR:

description
PREDICTED: uncharacterized protein LOC106570272, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU471719 False 1217 lncRNA 0.40 5 54458229 54495364
TU471707 True 1067 lncRNA 0.40 3 54460802 54462516

Neighbor

gene id symbol gene type direction distance location
LOC110524048 NA coding downstream 130521 54326233 ~ 54327989 (-)
LOC110524047 LOC106613533 coding downstream 138760 54310588 ~ 54319469 (-)
LOC110522971 NA coding downstream 152397 54301980 ~ 54305832 (-)
LOC110522871 LOC106613983 coding downstream 157172 54297793 ~ 54301057 (-)
LOC110522970 LOC106613460 coding downstream 209009 54200190 ~ 54249220 (-)
ssbp3b ssbp3 coding upstream 59687 54555051 ~ 54587190 (-)
erich3 erich3 coding upstream 144917 54640281 ~ 54661854 (-)
slc44a5b LOC106613541 coding upstream 221962 54717326 ~ 54770286 (-)
LOC110524065 elov7 coding upstream 403732 54899096 ~ 54924752 (-)
LOC118964528 NA coding upstream 502322 54997686 ~ 55005447 (-)
G416110 NA non-coding downstream 65818 54363286 ~ 54392411 (-)
G416123 NA non-coding downstream 77135 54377683 ~ 54381094 (-)
G416111 mutyh non-coding downstream 102074 54355522 ~ 54356155 (-)
G416107 NA non-coding downstream 105855 54351930 ~ 54352374 (-)
G416106 NA non-coding downstream 106540 54351288 ~ 54351689 (-)
G416253 NA non-coding upstream 161409 54656773 ~ 54664627 (-)
G416409 LOC106613542 non-coding upstream 337104 54832468 ~ 54833938 (-)
G416408 NA non-coding upstream 339852 54835216 ~ 54836716 (-)
G416417 NA non-coding upstream 350720 54846084 ~ 54846546 (-)
G416418 NA non-coding upstream 351994 54847358 ~ 54849988 (-)
G415464 nexn other downstream 452556 54002448 ~ 54005673 (-)
G415420 NA other downstream 565323 53890760 ~ 53892906 (-)
G415256 LOC106613513 other downstream 839365 53617683 ~ 53618864 (-)
G412613 NA other downstream 2845667 51558378 ~ 51612562 (-)
LOC110524071 LOC106613554 other upstream 645951 55123617 ~ 55181458 (-)
G417527 NA other upstream 1113471 55608835 ~ 55609730 (-)
LOC110522975 LOC106613586 other upstream 2213434 56703896 ~ 56711499 (-)
G418830 NA other upstream 2338662 56834026 ~ 56834595 (-)
G419603 NA other upstream 3115695 57611059 ~ 57611567 (-)

Expression


Co-expression Network